Analysis of interatomic Contacts of Structural Units in PDB entry:
9HB4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HB4 entry

There are 8 chains in PDB entry 9HB4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 7	GLN 450
B	GLU 5	ASP 449
C	GLU 5	ASP 449
D	LYS 9	PHE 450
E	LYS 9	ALA 449
F	VAL 10	ALA 449
G	ILE 800	LEU 926
H	LEU 841	LEU 888

There are110 helices in PDB entry 9HB4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	58	Right-handed alpha
Helix 2	AA2	A	75	88	Right-handed alpha
Helix 3	AA3	A	97	102	Right-handed 310
Helix 4	AA4	A	107	118	Right-handed alpha
Helix 5	AA5	A	173	183	Right-handed alpha
Helix 6	AA6	A	208	210	Right-handed 310
Helix 7	AA7	A	240	246	Right-handed alpha
Helix 8	AA8	A	273	290	Right-handed alpha
Helix 9	AA9	A	304	307	Right-handed 310
Helix 10	AB1	A	308	320	Right-handed alpha
Helix 11	AB2	A	351	356	Right-handed alpha
Helix 12	AB3	A	367	383	Right-handed alpha
Helix 13	AB4	A	387	401	Right-handed alpha
Helix 14	AB5	A	402	409	Right-handed alpha
Helix 15	AB6	A	410	421	Right-handed alpha
Helix 16	AB7	A	426	436	Right-handed alpha
Helix 17	AB8	A	439	449	Right-handed alpha
Helix 18	AB9	B	11	17	Right-handed alpha
Helix 19	AC1	B	42	58	Right-handed alpha
Helix 20	AC2	B	75	87	Right-handed alpha
Helix 21	AC3	B	99	102	Right-handed 310
Helix 22	AC4	B	107	118	Right-handed alpha
Helix 23	AC5	B	173	183	Right-handed alpha
Helix 24	AC6	B	208	210	Right-handed 310
Helix 25	AC7	B	240	247	Right-handed alpha
Helix 26	AC8	B	273	290	Right-handed alpha
Helix 27	AC9	B	303	307	Right-handed 310
Helix 28	AD1	B	308	319	Right-handed alpha
Helix 29	AD2	B	347	350	Right-handed 310
Helix 30	AD3	B	351	356	Right-handed alpha
Helix 31	AD4	B	367	383	Right-handed alpha
Helix 32	AD5	B	387	401	Right-handed alpha
Helix 33	AD6	B	403	409	Right-handed alpha
Helix 34	AD7	B	410	421	Right-handed alpha
Helix 35	AD8	B	426	437	Right-handed alpha
Helix 36	AD9	B	439	449	Right-handed alpha
Helix 37	AE1	C	11	17	Right-handed alpha
Helix 38	AE2	C	42	58	Right-handed alpha
Helix 39	AE3	C	75	87	Right-handed alpha
Helix 40	AE4	C	97	102	Right-handed 310
Helix 41	AE5	C	107	118	Right-handed alpha
Helix 42	AE6	C	173	184	Right-handed alpha
Helix 43	AE7	C	206	210	Right-handed 310
Helix 44	AE8	C	240	245	Right-handed alpha
Helix 45	AE9	C	273	290	Right-handed alpha
Helix 46	AF1	C	303	307	Right-handed 310
Helix 47	AF2	C	308	320	Right-handed alpha
Helix 48	AF3	C	353	356	Right-handed 310
Helix 49	AF4	C	367	382	Right-handed alpha
Helix 50	AF5	C	387	401	Right-handed alpha
Helix 51	AF6	C	403	409	Right-handed alpha
Helix 52	AF7	C	410	421	Right-handed alpha
Helix 53	AF8	C	426	437	Right-handed alpha
Helix 54	AF9	C	439	449	Right-handed alpha
Helix 55	AG1	D	49	66	Right-handed alpha
Helix 56	AG2	D	82	94	Right-handed alpha
Helix 57	AG3	D	106	109	Right-handed 310
Helix 58	AG4	D	114	126	Right-handed alpha
Helix 59	AG5	D	244	251	Right-handed alpha
Helix 60	AG6	D	269	286	Right-handed alpha
Helix 61	AG7	D	301	304	Right-handed 310
Helix 62	AG8	D	305	316	Right-handed alpha
Helix 63	AG9	D	347	352	Right-handed alpha
Helix 64	AH1	D	363	378	Right-handed alpha
Helix 65	AH2	D	383	397	Right-handed alpha
Helix 66	AH3	D	398	416	Right-handed alpha
Helix 67	AH4	D	422	432	Right-handed alpha
Helix 68	AH5	D	435	449	Right-handed alpha
Helix 69	AH6	E	19	23	Right-handed alpha
Helix 70	AH7	E	49	65	Right-handed alpha
Helix 71	AH8	E	82	95	Right-handed alpha
Helix 72	AH9	E	106	109	Right-handed 310
Helix 73	AI1	E	114	125	Right-handed alpha
Helix 74	AI2	E	175	185	Right-handed alpha
Helix 75	AI3	E	244	252	Right-handed alpha
Helix 76	AI4	E	257	261	Right-handed 310
Helix 77	AI5	E	269	287	Right-handed alpha
Helix 78	AI6	E	300	304	Right-handed 310
Helix 79	AI7	E	305	317	Right-handed alpha
Helix 80	AI8	E	347	352	Right-handed alpha
Helix 81	AI9	E	363	378	Right-handed alpha
Helix 82	AJ1	E	383	397	Right-handed alpha
Helix 83	AJ2	E	398	416	Right-handed alpha
Helix 84	AJ3	E	422	433	Right-handed alpha
Helix 85	AJ4	E	435	447	Right-handed alpha
Helix 86	AJ5	F	19	23	Right-handed alpha
Helix 87	AJ6	F	49	66	Right-handed alpha
Helix 88	AJ7	F	82	94	Right-handed alpha
Helix 89	AJ8	F	114	125	Right-handed alpha
Helix 90	AJ9	F	244	251	Right-handed alpha
Helix 91	AK1	F	271	286	Right-handed alpha
Helix 92	AK2	F	300	304	Right-handed 310
Helix 93	AK3	F	305	316	Right-handed alpha
Helix 94	AK4	F	347	352	Right-handed alpha
Helix 95	AK5	F	363	378	Right-handed alpha
Helix 96	AK6	F	383	397	Right-handed alpha
Helix 97	AK7	F	398	416	Right-handed alpha
Helix 98	AK8	F	422	433	Right-handed alpha
Helix 99	AK9	F	435	447	Right-handed alpha
Helix 100	AL1	G	805	816	Right-handed alpha
Helix 101	AL2	G	821	830	Right-handed alpha
Helix 102	AL3	G	836	842	Right-handed alpha
Helix 103	AL4	G	846	858	Right-handed alpha
Helix 104	AL5	G	866	876	Right-handed alpha
Helix 105	AL6	G	877	879	Right-handed 310
Helix 106	AL7	G	884	889	Right-handed alpha
Helix 107	AL8	G	890	892	Right-handed 310
Helix 108	AL9	G	893	906	Right-handed alpha
Helix 109	AM1	G	913	924	Right-handed alpha
Helix 110	AM2	H	846	854	Right-handed alpha

There are 26 sheets in PDB entry 9HB4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	298	302	parallel
Strand 3	A	326	331	parallel
Strand 4	A	65	69	parallel
Strand 5	A	358	362	parallel
Strand 6	D	433	434	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	232	239	first strand
Strand 2	A	121	128	anti-parallel
Strand 3	A	292	295	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	167	171	first strand
Strand 2	A	158	162	anti-parallel
Strand 3	A	130	139	anti-parallel
Strand 4	A	190	194	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	206	first strand
Strand 2	A	220	221	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	345	347	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	438	first strand
Strand 2	F	354	358	anti-parallel
Strand 3	F	72	76	parallel
Strand 4	F	323	328	parallel
Strand 5	F	295	299	parallel
Strand 6	F	100	104	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	39	40	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	97	first strand
Strand 2	B	298	302	parallel
Strand 3	B	326	331	parallel
Strand 4	B	65	69	parallel
Strand 5	B	358	362	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	167	171	first strand
Strand 2	B	158	162	anti-parallel
Strand 3	B	121	139	anti-parallel
Strand 4	B	229	239	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	200	202	first strand
Strand 2	B	190	193	anti-parallel
Strand 3	B	121	139	anti-parallel
Strand 4	B	292	295	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	206	first strand
Strand 2	B	220	221	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	336	337	first strand
Strand 2	B	345	346	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	298	301	parallel
Strand 3	C	326	331	parallel
Strand 4	C	65	69	parallel
Strand 5	C	358	362	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	167	170	first strand
Strand 2	C	158	162	anti-parallel
Strand 3	C	121	139	anti-parallel
Strand 4	C	229	239	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	200	201	first strand
Strand 2	C	189	194	anti-parallel
Strand 3	C	121	139	anti-parallel
Strand 4	C	292	295	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	337	first strand
Strand 2	C	345	347	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	104	first strand
Strand 2	D	295	299	parallel
Strand 3	D	323	328	parallel
Strand 4	D	72	76	parallel
Strand 5	D	354	358	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	238	243	first strand
Strand 2	D	127	133	anti-parallel
Strand 3	D	289	293	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	334	first strand
Strand 2	D	341	343	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	104	first strand
Strand 2	E	295	299	parallel
Strand 3	E	323	328	parallel
Strand 4	E	72	76	parallel
Strand 5	E	354	358	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	200	first strand
Strand 2	E	192	194	anti-parallel
Strand 3	E	128	138	anti-parallel
Strand 4	E	233	243	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	200	first strand
Strand 2	E	192	194	anti-parallel
Strand 3	E	128	138	anti-parallel
Strand 4	E	289	292	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	144	first strand
Strand 2	E	162	164	anti-parallel
Strand 3	E	169	171	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	334	first strand
Strand 2	E	341	343	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	240	243	first strand
Strand 2	F	127	131	anti-parallel
Strand 3	F	289	293	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	332	334	first strand
Strand 2	F	341	343	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HB4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HB4