Analysis of interatomic Contacts of Structural Units in PDB entry:
9HB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HB8 entry

There are 2 chains in PDB entry 9HB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 149ILE 490
B
 LEU 148ILE 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9HB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
157 159Right-handed 310
Helix 2
AA2
A
160 167Right-handed alpha
Helix 3
AA3
A
184 201Right-handed alpha
Helix 4
AA4
A
213 229Right-handed alpha
Helix 5
AA5
A
230 235Right-handed alpha
Helix 6
AA6
A
236 250Right-handed alpha
Helix 7
AA7
A
259 271Right-handed alpha
Helix 8
AA8
A
283 293Right-handed alpha
Helix 9
AA9
A
315 323Right-handed alpha
Helix 10
AB1
A
323 328Right-handed alpha
Helix 11
AB2
A
329 344Right-handed alpha
Helix 12
AB3
A
347 362Right-handed alpha
Helix 13
AB4
A
377 382Right-handed alpha
Helix 14
AB5
A
383 391Right-handed alpha
Helix 15
AB6
A
401 406Right-handed alpha
Helix 16
AB7
A
424 439Right-handed alpha
Helix 17
AB8
A
459 489Right-handed alpha
Helix 18
AB9
B
157 159Right-handed 310
Helix 19
AC1
B
160 167Right-handed alpha
Helix 20
AC2
B
185 201Right-handed alpha
Helix 21
AC3
B
213 235Right-handed alpha
Helix 22
AC4
B
236 250Right-handed alpha
Helix 23
AC5
B
259 272Right-handed alpha
Helix 24
AC6
B
283 293Right-handed alpha
Helix 25
AC7
B
315 323Right-handed alpha
Helix 26
AC8
B
323 328Right-handed alpha
Helix 27
AC9
B
329 344Right-handed alpha
Helix 28
AD1
B
347 362Right-handed alpha
Helix 29
AD2
B
377 383Right-handed alpha
Helix 30
AD3
B
383 392Right-handed alpha
Helix 31
AD4
B
401 406Right-handed alpha
Helix 32
AD5
B
424 437Right-handed alpha
Helix 33
AD6
B
459 489Right-handed alpha
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There are 7 sheets in PDB entry 9HB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
280 282anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 277first strand
Strand 2
A
295 298parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
372 375first strand
Strand 2
A
366 369anti-parallel
Strand 3
A
419 422parallel
Strand 4
A
397 399parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 448first strand
Strand 2
A
453 457anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 277first strand
Strand 2
B
295 298parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 375first strand
Strand 2
B
366 369anti-parallel
Strand 3
B
420 422parallel
Strand 4
B
398 399parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 448first strand
Strand 2
B
453 457anti-parallel
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