Analysis of interatomic Contacts of Structural Units in PDB entry:
9HBY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HBY entry

There are 4 chains in PDB entry 9HBY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 34GLY 350
C
 GLU 34ALA 349
D
 GLU 34GLY 350
E
 SER 292GLY 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 9HBY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 51Right-handed alpha
Helix 2
AA2
A
52 54Right-handed 310
Helix 3
AA3
A
58 74Right-handed alpha
Helix 4
AA4
A
88 101Right-handed alpha
Helix 5
AA5
A
119 128Right-handed alpha
Helix 6
AA6
A
134 142Right-handed alpha
Helix 7
AA7
A
143 173Right-handed alpha
Helix 8
AA8
A
182 187Right-handed alpha
Helix 9
AA9
A
193 200Right-handed alpha
Helix 10
AB1
A
206 214Right-handed alpha
Helix 11
AB2
A
232 237Right-handed alpha
Helix 12
AB3
A
249 258Right-handed alpha
Helix 13
AB4
A
263 268Right-handed 310
Helix 14
AB5
A
340 349Right-handed alpha
Helix 15
AB6
C
36 51Right-handed alpha
Helix 16
AB7
C
52 54Right-handed 310
Helix 17
AB8
C
58 74Right-handed alpha
Helix 18
AB9
C
88 101Right-handed alpha
Helix 19
AC1
C
119 128Right-handed alpha
Helix 20
AC2
C
134 142Right-handed alpha
Helix 21
AC3
C
143 173Right-handed alpha
Helix 22
AC4
C
182 187Right-handed alpha
Helix 23
AC5
C
193 200Right-handed alpha
Helix 24
AC6
C
205 214Right-handed alpha
Helix 25
AC7
C
232 237Right-handed alpha
Helix 26
AC8
C
249 258Right-handed alpha
Helix 27
AC9
C
263 268Right-handed 310
Helix 28
AD1
C
307 312Right-handed alpha
Helix 29
AD2
C
317 320Right-handed 310
Helix 30
AD3
C
340 349Right-handed alpha
Helix 31
AD4
D
36 51Right-handed alpha
Helix 32
AD5
D
52 54Right-handed 310
Helix 33
AD6
D
58 74Right-handed alpha
Helix 34
AD7
D
88 101Right-handed alpha
Helix 35
AD8
D
119 128Right-handed alpha
Helix 36
AD9
D
134 142Right-handed alpha
Helix 37
AE1
D
143 173Right-handed alpha
Helix 38
AE2
D
182 187Right-handed alpha
Helix 39
AE3
D
193 200Right-handed alpha
Helix 40
AE4
D
206 215Right-handed alpha
Helix 41
AE5
D
232 237Right-handed alpha
Helix 42
AE6
D
249 258Right-handed alpha
Helix 43
AE7
D
263 268Right-handed 310
Helix 44
AE8
D
307 312Right-handed alpha
Helix 45
AE9
D
317 320Right-handed 310
Helix 46
AF1
D
340 349Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 9HBY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 248first strand
Strand 2
A
280 282anti-parallel
Strand 3
A
270 272anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
322 326anti-parallel
Strand 3
A
331 335anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
270 272first strand
Strand 2
C
280 282anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
285 286first strand
Strand 2
C
322 326anti-parallel
Strand 3
C
331 335anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
109 110first strand
Strand 2
D
114 115anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
247 248first strand
Strand 2
D
276 282anti-parallel
Strand 3
D
270 273anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
284 286first strand
Strand 2
D
322 327anti-parallel
Strand 3
D
331 335anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il