Analysis of interatomic Contacts of Structural Units in PDB entry:
9HC3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HC3 entry

There are 3 chains in PDB entry 9HC3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 567PHE 633
A
 LEU 635ALA 690
A
 ALA 692ARG 834
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9HC3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
568 576Right-handed alpha
Helix 2
AA2
A
579 604Right-handed alpha
Helix 3
AA3
A
607 612Right-handed alpha
Helix 4
AA4
A
614 631Right-handed alpha
Helix 5
AA5
A
631 636Right-handed alpha
Helix 6
AA6
A
640 1011Right-handed alpha
Helix 7
AA7
A
1038 1051Right-handed alpha
Helix 8
AA8
A
1059 1081Right-handed alpha
Helix 9
AA9
A
1084 1090Right-handed alpha
Helix 10
AB1
A
1092 1107Right-handed alpha
Helix 11
AB2
A
1107 1112Right-handed alpha
Helix 12
AB3
A
1114 1123Right-handed alpha
Helix 13
AB4
A
1125 1135Right-handed alpha
Helix 14
AB5
A
1136 1142Right-handed alpha
Helix 15
AB6
A
1142 1156Right-handed alpha
Helix 16
AB7
A
1157 1161Right-handed 310
Helix 17
AB8
A
690 715Right-handed alpha
Helix 18
AB9
A
737 760Right-handed alpha
Helix 19
AC1
A
765 794Right-handed alpha
Helix 20
AC2
A
797 818Right-handed alpha
Helix 21
AC3
A
818 828Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9HC3.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1014 1019first strand
Strand 2
A
1025 1028anti-parallel
Strand 3
A
1031 1034anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il