Analysis of interatomic Contacts of Structural Units in PDB entry:
9HC5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HC5 entry

There are 3 chains in PDB entry 9HC5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 19	LEU 527
B	THR 19	LEU 527
C	GLU 2	VAL 523

There are 25 helices in PDB entry 9HC5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	41	47	Right-handed alpha
Helix 2	AA2	A	74	77	Right-handed 310
Helix 3	AA3	A	78	86	Right-handed alpha
Helix 4	AA4	A	125	130	Right-handed alpha
Helix 5	AA5	A	219	223	Right-handed 310
Helix 6	AA6	A	265	271	Right-handed alpha
Helix 7	AA7	A	389	395	Right-handed alpha
Helix 8	AA8	A	447	458	Right-handed alpha
Helix 9	AA9	A	472	475	Right-handed 310
Helix 10	AB1	B	41	46	Right-handed 310
Helix 11	AB2	B	74	77	Right-handed 310
Helix 12	AB3	B	78	86	Right-handed alpha
Helix 13	AB4	B	125	130	Right-handed alpha
Helix 14	AB5	B	219	223	Right-handed 310
Helix 15	AB6	B	389	395	Right-handed alpha
Helix 16	AB7	B	447	452	Right-handed alpha
Helix 17	AB8	B	453	458	Right-handed alpha
Helix 18	AB9	B	472	475	Right-handed 310
Helix 19	AC1	C	43	47	Right-handed 310
Helix 20	AC2	C	74	77	Right-handed 310
Helix 21	AC3	C	78	86	Right-handed alpha
Helix 22	AC4	C	125	130	Right-handed alpha
Helix 23	AC5	C	219	223	Right-handed 310
Helix 24	AC6	C	389	395	Right-handed alpha
Helix 25	AC7	C	447	456	Right-handed alpha

There are 21 sheets in PDB entry 9HC5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	58	first strand
Strand 2	A	184	192	anti-parallel
Strand 3	A	95	102	anti-parallel
Strand 4	A	148	149	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	72	first strand
Strand 2	A	166	173	anti-parallel
Strand 3	A	110	116	anti-parallel
Strand 4	A	134	138	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	158	159	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	444	first strand
Strand 2	A	415	424	anti-parallel
Strand 3	A	488	493	anti-parallel
Strand 4	A	476	482	anti-parallel
Strand 5	A	464	471	anti-parallel
Strand 6	A	506	513	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	502	first strand
Strand 2	A	233	238	anti-parallel
Strand 3	A	415	424	anti-parallel
Strand 4	A	488	493	anti-parallel
Strand 5	A	523	524	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	253	first strand
Strand 2	A	257	258	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	280	first strand
Strand 2	A	288	292	anti-parallel
Strand 3	A	363	366	anti-parallel
Strand 4	A	337	348	anti-parallel
Strand 5	A	324	334	anti-parallel
Strand 6	A	376	386	anti-parallel
Strand 7	A	272	280	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	21	first strand
Strand 2	B	146	149	parallel
Strand 3	B	95	101	anti-parallel
Strand 4	B	184	192	anti-parallel
Strand 5	B	49	58	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	72	first strand
Strand 2	B	166	177	anti-parallel
Strand 3	B	107	116	anti-parallel
Strand 4	B	134	138	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	159	first strand
Strand 2	B	90	92	anti-parallel
Strand 3	B	197	198	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	444	first strand
Strand 2	B	415	424	anti-parallel
Strand 3	B	487	493	anti-parallel
Strand 4	B	476	483	anti-parallel
Strand 5	B	464	471	anti-parallel
Strand 6	B	506	513	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	499	502	first strand
Strand 2	B	235	238	anti-parallel
Strand 3	B	415	424	anti-parallel
Strand 4	B	487	493	anti-parallel
Strand 5	B	523	524	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	253	first strand
Strand 2	B	257	258	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	272	280	first strand
Strand 2	B	287	292	anti-parallel
Strand 3	B	363	367	anti-parallel
Strand 4	B	337	348	anti-parallel
Strand 5	B	324	334	anti-parallel
Strand 6	B	376	386	anti-parallel
Strand 7	B	272	280	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	8	first strand
Strand 2	C	15	21	anti-parallel
Strand 3	C	142	149	parallel
Strand 4	C	95	101	anti-parallel
Strand 5	C	183	192	anti-parallel
Strand 6	C	49	59	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	72	first strand
Strand 2	C	166	176	anti-parallel
Strand 3	C	108	116	anti-parallel
Strand 4	C	134	138	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	197	198	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	444	first strand
Strand 2	C	419	424	anti-parallel
Strand 3	C	235	238	anti-parallel
Strand 4	C	499	502	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	253	first strand
Strand 2	C	257	258	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	280	first strand
Strand 2	C	288	292	anti-parallel
Strand 3	C	363	366	anti-parallel
Strand 4	C	337	348	anti-parallel
Strand 5	C	324	334	anti-parallel
Strand 6	C	376	386	anti-parallel
Strand 7	C	272	280	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	415	417	first strand
Strand 2	C	488	491	anti-parallel
Strand 3	C	476	482	anti-parallel
Strand 4	C	464	471	anti-parallel
Strand 5	C	506	513	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HC5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HC5