Analysis of interatomic Contacts of Structural Units in PDB entry:
9HDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HDD entry

There are 2 chains in PDB entry 9HDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 560ASP 968
B
 ALA 560ASP 968
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9HDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
560 594Right-handed alpha
Helix 2
AA2
A
604 632Right-handed alpha
Helix 3
AA3
A
639 668Right-handed alpha
Helix 4
AA4
A
669 693Right-handed alpha
Helix 5
AA5
A
706 730Right-handed alpha
Helix 6
AA6
A
731 733Right-handed 310
Helix 7
AA7
A
734 741Right-handed 310
Helix 8
AA8
A
745 762Right-handed alpha
Helix 9
AA9
A
770 801Right-handed alpha
Helix 10
AB1
A
804 810Right-handed alpha
Helix 11
AB2
A
812 838Right-handed alpha
Helix 12
AB3
A
839 841Right-handed 310
Helix 13
AB4
A
850 874Right-handed alpha
Helix 14
AB5
A
880 913Right-handed alpha
Helix 15
AB6
A
925 958Right-handed alpha
Helix 16
AB7
A
961 966Right-handed alpha
Helix 17
AB8
B
561 594Right-handed alpha
Helix 18
AB9
B
604 633Right-handed alpha
Helix 19
AC1
B
639 668Right-handed alpha
Helix 20
AC2
B
669 695Right-handed alpha
Helix 21
AC3
B
695 700Right-handed alpha
Helix 22
AC4
B
706 730Right-handed alpha
Helix 23
AC5
B
731 733Right-handed 310
Helix 24
AC6
B
734 739Right-handed alpha
Helix 25
AC7
B
745 762Right-handed alpha
Helix 26
AC8
B
770 801Right-handed alpha
Helix 27
AC9
B
804 810Right-handed alpha
Helix 28
AD1
B
812 838Right-handed alpha
Helix 29
AD2
B
838 843Right-handed alpha
Helix 30
AD3
B
850 874Right-handed alpha
Helix 31
AD4
B
880 913Right-handed alpha
Helix 32
AD5
B
925 958Right-handed alpha
Helix 33
AD6
B
961 968Right-handed alpha
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There are no sheets in PDB entry 9HDD
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