Analysis of interatomic Contacts of Structural Units in PDB entry:
9HDF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HDF entry

There are 38 chains in PDB entry 9HDF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 529	GLN 776
B	PHE 529	LEU 621
B	PHE 623	GLN 776
C	PHE 529	GLN 776
D	PHE 529	GLN 776
E	PHE 529	LEU 621
E	PHE 623	GLN 776
F	PHE 529	GLN 776
G	PHE 529	GLN 776
H	PHE 529	HIS 775
I	PHE 529	GLN 776
J	PHE 529	LEU 621
J	PHE 623	GLN 776
K	PHE 529	LEU 621
K	PHE 623	GLN 776
L	PHE 529	GLN 776
M	PHE 529	GLN 776
N	PHE 529	LEU 621
N	PHE 623	GLN 776
O	PHE 529	LEU 621
O	PHE 623	GLN 776
P	PHE 529	HIS 775
a	SER 16	LEU 29
b	SER 16	LEU 29
c	SER 16	LEU 29
d	SER 16	LEU 29
e	SER 16	LEU 29
f	SER 16	SER 28
g	SER 16	SER 28
h	SER 16	SER 28
i	ALA 15	LEU 29
j	SER 16	LEU 29
k	SER 16	LEU 29
l	SER 16	LEU 29
m	SER 16	LEU 29
n	ALA 15	LEU 29
o	SER 16	LEU 29
p	SER 16	LEU 29

There are192 helices in PDB entry 9HDF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	531	540	Right-handed alpha
Helix 2	AA2	A	555	580	Right-handed alpha
Helix 3	AA3	A	583	587	Right-handed 310
Helix 4	AA4	A	588	617	Right-handed alpha
Helix 5	AA5	A	631	636	Right-handed 310
Helix 6	AA6	A	638	657	Right-handed alpha
Helix 7	AA7	A	659	672	Right-handed alpha
Helix 8	AA8	A	682	704	Right-handed alpha
Helix 9	AA9	A	710	742	Right-handed alpha
Helix 10	AB1	A	743	746	Right-handed 310
Helix 11	AB2	A	750	766	Right-handed alpha
Helix 12	AB3	B	531	540	Right-handed alpha
Helix 13	AB4	B	555	580	Right-handed alpha
Helix 14	AB5	B	583	587	Right-handed 310
Helix 15	AB6	B	588	617	Right-handed alpha
Helix 16	AB7	B	632	636	Right-handed 310
Helix 17	AB8	B	638	657	Right-handed alpha
Helix 18	AB9	B	659	672	Right-handed alpha
Helix 19	AC1	B	682	704	Right-handed alpha
Helix 20	AC2	B	709	742	Right-handed alpha
Helix 21	AC3	B	743	746	Right-handed 310
Helix 22	AC4	B	750	766	Right-handed alpha
Helix 23	AC5	C	531	540	Right-handed alpha
Helix 24	AC6	C	555	580	Right-handed alpha
Helix 25	AC7	C	583	587	Right-handed 310
Helix 26	AC8	C	588	617	Right-handed alpha
Helix 27	AC9	C	632	636	Right-handed 310
Helix 28	AD1	C	638	657	Right-handed alpha
Helix 29	AD2	C	659	672	Right-handed alpha
Helix 30	AD3	C	682	704	Right-handed alpha
Helix 31	AD4	C	710	742	Right-handed alpha
Helix 32	AD5	C	743	746	Right-handed 310
Helix 33	AD6	C	750	766	Right-handed alpha
Helix 34	AD7	D	531	540	Right-handed alpha
Helix 35	AD8	D	555	580	Right-handed alpha
Helix 36	AD9	D	583	587	Right-handed 310
Helix 37	AE1	D	588	617	Right-handed alpha
Helix 38	AE2	D	631	636	Right-handed 310
Helix 39	AE3	D	638	657	Right-handed alpha
Helix 40	AE4	D	659	672	Right-handed alpha
Helix 41	AE5	D	682	704	Right-handed alpha
Helix 42	AE6	D	707	742	Right-handed alpha
Helix 43	AE7	D	743	746	Right-handed 310
Helix 44	AE8	D	750	766	Right-handed alpha
Helix 45	AE9	E	531	540	Right-handed alpha
Helix 46	AF1	E	555	580	Right-handed alpha
Helix 47	AF2	E	583	587	Right-handed 310
Helix 48	AF3	E	588	617	Right-handed alpha
Helix 49	AF4	E	632	636	Right-handed 310
Helix 50	AF5	E	638	657	Right-handed alpha
Helix 51	AF6	E	659	672	Right-handed alpha
Helix 52	AF7	E	682	704	Right-handed alpha
Helix 53	AF8	E	711	742	Right-handed alpha
Helix 54	AF9	E	743	746	Right-handed 310
Helix 55	AG1	E	750	766	Right-handed alpha
Helix 56	AG2	F	531	540	Right-handed alpha
Helix 57	AG3	F	555	580	Right-handed alpha
Helix 58	AG4	F	583	587	Right-handed 310
Helix 59	AG5	F	588	617	Right-handed alpha
Helix 60	AG6	F	631	636	Right-handed 310
Helix 61	AG7	F	638	657	Right-handed alpha
Helix 62	AG8	F	659	672	Right-handed alpha
Helix 63	AG9	F	682	704	Right-handed alpha
Helix 64	AH1	F	707	742	Right-handed alpha
Helix 65	AH2	F	743	746	Right-handed 310
Helix 66	AH3	F	750	766	Right-handed alpha
Helix 67	AH4	G	531	540	Right-handed alpha
Helix 68	AH5	G	555	580	Right-handed alpha
Helix 69	AH6	G	583	587	Right-handed 310
Helix 70	AH7	G	588	617	Right-handed alpha
Helix 71	AH8	G	632	636	Right-handed 310
Helix 72	AH9	G	638	657	Right-handed alpha
Helix 73	AI1	G	659	672	Right-handed alpha
Helix 74	AI2	G	682	704	Right-handed alpha
Helix 75	AI3	G	707	742	Right-handed alpha
Helix 76	AI4	G	743	746	Right-handed 310
Helix 77	AI5	G	750	766	Right-handed alpha
Helix 78	AI6	H	531	540	Right-handed alpha
Helix 79	AI7	H	555	580	Right-handed alpha
Helix 80	AI8	H	583	587	Right-handed 310
Helix 81	AI9	H	588	617	Right-handed alpha
Helix 82	AJ1	H	631	636	Right-handed 310
Helix 83	AJ2	H	638	657	Right-handed alpha
Helix 84	AJ3	H	659	672	Right-handed alpha
Helix 85	AJ4	H	682	704	Right-handed alpha
Helix 86	AJ5	H	709	742	Right-handed alpha
Helix 87	AJ6	H	743	746	Right-handed 310
Helix 88	AJ7	H	750	766	Right-handed alpha
Helix 89	AJ8	I	531	540	Right-handed alpha
Helix 90	AJ9	I	555	580	Right-handed alpha
Helix 91	AK1	I	583	587	Right-handed 310
Helix 92	AK2	I	588	617	Right-handed alpha
Helix 93	AK3	I	631	636	Right-handed 310
Helix 94	AK4	I	638	657	Right-handed alpha
Helix 95	AK5	I	659	672	Right-handed alpha
Helix 96	AK6	I	682	704	Right-handed alpha
Helix 97	AK7	I	709	742	Right-handed alpha
Helix 98	AK8	I	743	746	Right-handed 310
Helix 99	AK9	I	750	766	Right-handed alpha
Helix 100	AL1	J	531	540	Right-handed alpha
Helix 101	AL2	J	555	580	Right-handed alpha
Helix 102	AL3	J	583	587	Right-handed 310
Helix 103	AL4	J	588	617	Right-handed alpha
Helix 104	AL5	J	631	636	Right-handed 310
Helix 105	AL6	J	638	657	Right-handed alpha
Helix 106	AL7	J	659	672	Right-handed alpha
Helix 107	AL8	J	682	704	Right-handed alpha
Helix 108	AL9	J	710	742	Right-handed alpha
Helix 109	AM1	J	743	746	Right-handed 310
Helix 110	AM2	J	750	766	Right-handed alpha
Helix 111	AM3	K	531	540	Right-handed alpha
Helix 112	AM4	K	555	580	Right-handed alpha
Helix 113	AM5	K	583	587	Right-handed 310
Helix 114	AM6	K	588	617	Right-handed alpha
Helix 115	AM7	K	632	636	Right-handed 310
Helix 116	AM8	K	638	657	Right-handed alpha
Helix 117	AM9	K	659	672	Right-handed alpha
Helix 118	AN1	K	682	704	Right-handed alpha
Helix 119	AN2	K	711	742	Right-handed alpha
Helix 120	AN3	K	743	746	Right-handed 310
Helix 121	AN4	K	750	766	Right-handed alpha
Helix 122	AN5	L	531	540	Right-handed alpha
Helix 123	AN6	L	555	580	Right-handed alpha
Helix 124	AN7	L	583	587	Right-handed 310
Helix 125	AN8	L	588	617	Right-handed alpha
Helix 126	AN9	L	631	636	Right-handed 310
Helix 127	AO1	L	638	657	Right-handed alpha
Helix 128	AO2	L	659	672	Right-handed alpha
Helix 129	AO3	L	682	704	Right-handed alpha
Helix 130	AO4	L	707	742	Right-handed alpha
Helix 131	AO5	L	743	746	Right-handed 310
Helix 132	AO6	L	750	766	Right-handed alpha
Helix 133	AO7	M	531	540	Right-handed alpha
Helix 134	AO8	M	555	580	Right-handed alpha
Helix 135	AO9	M	583	587	Right-handed 310
Helix 136	AP1	M	588	617	Right-handed alpha
Helix 137	AP2	M	631	636	Right-handed 310
Helix 138	AP3	M	638	657	Right-handed alpha
Helix 139	AP4	M	659	672	Right-handed alpha
Helix 140	AP5	M	682	704	Right-handed alpha
Helix 141	AP6	M	707	742	Right-handed alpha
Helix 142	AP7	M	743	746	Right-handed 310
Helix 143	AP8	M	750	766	Right-handed alpha
Helix 144	AP9	N	531	540	Right-handed alpha
Helix 145	AQ1	N	555	580	Right-handed alpha
Helix 146	AQ2	N	583	587	Right-handed 310
Helix 147	AQ3	N	588	617	Right-handed alpha
Helix 148	AQ4	N	632	636	Right-handed 310
Helix 149	AQ5	N	638	657	Right-handed alpha
Helix 150	AQ6	N	659	672	Right-handed alpha
Helix 151	AQ7	N	682	704	Right-handed alpha
Helix 152	AQ8	N	711	742	Right-handed alpha
Helix 153	AQ9	N	743	746	Right-handed 310
Helix 154	AR1	N	750	766	Right-handed alpha
Helix 155	AR2	O	531	540	Right-handed alpha
Helix 156	AR3	O	555	580	Right-handed alpha
Helix 157	AR4	O	583	587	Right-handed 310
Helix 158	AR5	O	588	617	Right-handed alpha
Helix 159	AR6	O	631	636	Right-handed 310
Helix 160	AR7	O	638	657	Right-handed alpha
Helix 161	AR8	O	659	672	Right-handed alpha
Helix 162	AR9	O	682	704	Right-handed alpha
Helix 163	AS1	O	711	742	Right-handed alpha
Helix 164	AS2	O	743	746	Right-handed 310
Helix 165	AS3	O	750	766	Right-handed alpha
Helix 166	AS4	P	531	540	Right-handed alpha
Helix 167	AS5	P	555	580	Right-handed alpha
Helix 168	AS6	P	583	587	Right-handed 310
Helix 169	AS7	P	588	617	Right-handed alpha
Helix 170	AS8	P	631	636	Right-handed 310
Helix 171	AS9	P	638	657	Right-handed alpha
Helix 172	AT1	P	659	672	Right-handed alpha
Helix 173	AT2	P	682	704	Right-handed alpha
Helix 174	AT3	P	711	742	Right-handed alpha
Helix 175	AT4	P	743	746	Right-handed 310
Helix 176	AT5	P	750	766	Right-handed alpha
Helix 177	AT6	a	18	27	Right-handed alpha
Helix 178	AT7	b	18	27	Right-handed alpha
Helix 179	AT8	c	18	27	Right-handed alpha
Helix 180	AT9	d	18	27	Right-handed alpha
Helix 181	AU1	e	18	27	Right-handed alpha
Helix 182	AU2	f	18	27	Right-handed alpha
Helix 183	AU3	g	18	27	Right-handed alpha
Helix 184	AU4	h	18	27	Right-handed alpha
Helix 185	AU5	i	18	27	Right-handed alpha
Helix 186	AU6	j	18	27	Right-handed alpha
Helix 187	AU7	k	18	27	Right-handed alpha
Helix 188	AU8	l	18	27	Right-handed alpha
Helix 189	AU9	m	18	27	Right-handed alpha
Helix 190	AV1	n	18	27	Right-handed alpha
Helix 191	AV2	o	18	27	Right-handed alpha
Helix 192	AV3	p	18	27	Right-handed alpha

There are 32 sheets in PDB entry 9HDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	621	624	first strand
Strand 2	A	627	629	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	674	676	first strand
Strand 2	A	769	771	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	621	624	first strand
Strand 2	B	627	629	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	674	676	first strand
Strand 2	B	769	771	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	621	624	first strand
Strand 2	C	627	629	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	674	676	first strand
Strand 2	C	769	771	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	621	624	first strand
Strand 2	D	627	629	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	674	676	first strand
Strand 2	D	769	771	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	621	624	first strand
Strand 2	E	627	629	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	674	676	first strand
Strand 2	E	769	771	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	621	624	first strand
Strand 2	F	627	629	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	674	676	first strand
Strand 2	F	769	771	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	621	624	first strand
Strand 2	G	627	629	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	674	676	first strand
Strand 2	G	769	771	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	621	624	first strand
Strand 2	H	627	629	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	674	675	first strand
Strand 2	H	770	771	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	621	624	first strand
Strand 2	I	627	629	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	674	676	first strand
Strand 2	I	769	771	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	621	624	first strand
Strand 2	J	627	629	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	674	676	first strand
Strand 2	J	769	771	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	621	624	first strand
Strand 2	K	627	629	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	674	676	first strand
Strand 2	K	769	771	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	621	624	first strand
Strand 2	L	627	629	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	674	676	first strand
Strand 2	L	769	771	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	621	624	first strand
Strand 2	M	627	629	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	674	676	first strand
Strand 2	M	769	771	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	621	624	first strand
Strand 2	N	627	629	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	674	676	first strand
Strand 2	N	769	771	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	621	624	first strand
Strand 2	O	627	629	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	674	676	first strand
Strand 2	O	769	771	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	621	624	first strand
Strand 2	P	627	629	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	674	676	first strand
Strand 2	P	769	771	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HDF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HDF