Analysis of interatomic Contacts of Structural Units in PDB entry:
9HDM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HDM entry

There are 2 chains in PDB entry 9HDM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -7ASN 367
B
 MET 1SER 370
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 9HDM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 17Right-handed alpha
Helix 2
AA2
A
21 30Right-handed alpha
Helix 3
AA3
A
45 62Right-handed alpha
Helix 4
AA4
A
64 70Right-handed alpha
Helix 5
AA5
A
106 109Right-handed 310
Helix 6
AA6
A
127 132Right-handed alpha
Helix 7
AA7
A
144 175Right-handed alpha
Helix 8
AA8
A
181 189Right-handed alpha
Helix 9
AA9
A
301 308Right-handed alpha
Helix 10
AB1
A
323 328Right-handed alpha
Helix 11
AB2
A
356 361Right-handed alpha
Helix 12
AB3
B
12 17Right-handed alpha
Helix 13
AB4
B
21 30Right-handed alpha
Helix 14
AB5
B
45 62Right-handed alpha
Helix 15
AB6
B
64 70Right-handed alpha
Helix 16
AB7
B
106 109Right-handed 310
Helix 17
AB8
B
127 132Right-handed alpha
Helix 18
AB9
B
144 175Right-handed alpha
Helix 19
AC1
B
181 189Right-handed alpha
Helix 20
AC2
B
301 308Right-handed alpha
Helix 21
AC3
B
323 328Right-handed alpha
Helix 22
AC4
B
356 361Right-handed alpha
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There are 8 sheets in PDB entry 9HDM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
36 40parallel
Strand 3
A
296 300anti-parallel
Strand 4
A
235 238anti-parallel
Strand 5
A
331 340anti-parallel
Strand 6
A
194 200anti-parallel
Strand 7
A
96 104anti-parallel
Strand 8
A
81 87anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
36 40parallel
Strand 3
A
296 300anti-parallel
Strand 4
A
235 238anti-parallel
Strand 5
A
331 340anti-parallel
Strand 6
A
242 245anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 289first strand
Strand 2
A
276 280anti-parallel
Strand 3
A
317 320anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
A
354 355anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
36 40parallel
Strand 3
B
296 300anti-parallel
Strand 4
B
235 238anti-parallel
Strand 5
B
331 340anti-parallel
Strand 6
B
194 200anti-parallel
Strand 7
B
97 104anti-parallel
Strand 8
B
81 86anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 11first strand
Strand 2
B
36 40parallel
Strand 3
B
296 300anti-parallel
Strand 4
B
235 238anti-parallel
Strand 5
B
331 340anti-parallel
Strand 6
B
242 245anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
286 289first strand
Strand 2
B
276 280anti-parallel
Strand 3
B
317 320anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 349first strand
Strand 2
B
354 355anti-parallel
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