Analysis of interatomic Contacts of Structural Units in PDB entry:
9HDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HDP entry

There are 7 chains in PDB entry 9HDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 249GLY 1273
B
 A 6 T 22
C
 A 11 T 20
D
 A 0 A 8
E
 T 25 A 50
F
 A 1 A 19
G
 A 1 A 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9HDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
253 258Right-handed 310
Helix 2
AA2
A
259 278Right-handed alpha
Helix 3
AA3
A
283 310Right-handed alpha
Helix 4
AA4
A
311 329Right-handed alpha
Helix 5
AA5
A
333 370Right-handed alpha
Helix 6
AA6
A
374 382Right-handed alpha
Helix 7
AA7
A
403 419Right-handed alpha
Helix 8
AA8
A
425 436Right-handed alpha
Helix 9
AA9
A
442 450Right-handed alpha
Helix 10
AB1
A
454 464Right-handed alpha
Helix 11
AB2
A
477 484Right-handed alpha
Helix 12
AB3
A
484 503Right-handed alpha
Helix 13
AB4
A
507 510Right-handed 310
Helix 14
AB5
A
526 528Right-handed 310
Helix 15
AB6
A
537 559Right-handed alpha
Helix 16
AB7
A
572 589Right-handed alpha
Helix 17
AB8
A
609 620Right-handed alpha
Helix 18
AB9
A
624 634Right-handed alpha
Helix 19
AC1
A
663 682Right-handed alpha
Helix 20
AC2
A
710 730Right-handed alpha
Helix 21
AC3
A
746 757Right-handed alpha
Helix 22
AC4
A
776 778Right-handed 310
Helix 23
AC5
A
779 799Right-handed alpha
Helix 24
AC6
A
805 828Right-handed alpha
Helix 25
AC7
A
833 849Right-handed alpha
Helix 26
AC8
A
857 862Right-handed alpha
Helix 27
AC9
A
866 870Right-handed 310
Helix 28
AD1
A
874 885Right-handed alpha
Helix 29
AD2
A
886 893Right-handed alpha
Helix 30
AD3
A
897 902Right-handed alpha
Helix 31
AD4
A
910 916Right-handed alpha
Helix 32
AD5
A
932 947Right-handed alpha
Helix 33
AD6
A
961 967Right-handed alpha
Helix 34
AD7
A
970 981Right-handed alpha
Helix 35
AD8
A
984 989Right-handed alpha
Helix 36
AD9
A
990 994Right-handed 310
Helix 37
AE1
A
998 1006Right-handed alpha
Helix 38
AE2
A
1009 1021Right-handed alpha
Helix 39
AE3
A
1022 1031Right-handed alpha
Helix 40
AE4
A
1034 1043Right-handed alpha
Helix 41
AE5
A
1048 1061Right-handed alpha
Helix 42
AE6
A
1067 1076Right-handed alpha
Helix 43
AE7
A
1081 1095Right-handed alpha
Helix 44
AE8
A
1098 1110Right-handed alpha
Helix 45
AE9
A
1115 1123Right-handed alpha
Helix 46
AF1
A
1139 1145Right-handed alpha
Helix 47
AF2
A
1150 1164Right-handed alpha
Helix 48
AF3
A
1181 1185Right-handed 310
Helix 49
AF4
A
1189 1206Right-handed alpha
Helix 50
AF5
A
1215 1238Right-handed alpha
Helix 51
AF6
A
1239 1258Right-handed alpha
Helix 52
AF7
A
1259 1267Right-handed alpha
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There are 6 sheets in PDB entry 9HDP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 394first strand
Strand 2
A
400 401anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 536first strand
Strand 2
A
512 518anti-parallel
Strand 3
A
638 643parallel
Strand 4
A
646 647anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 536first strand
Strand 2
A
512 518anti-parallel
Strand 3
A
638 643parallel
Strand 4
A
651 652anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 700first strand
Strand 2
A
703 709anti-parallel
Strand 3
A
594 600anti-parallel
Strand 4
A
739 743anti-parallel
Strand 5
A
760 761parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 690first strand
Strand 2
A
693 695anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 768first strand
Strand 2
A
771 774anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il