Analysis of interatomic Contacts of Structural Units in PDB entry:
9HDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HDR entry

There are 7 chains in PDB entry 9HDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 7GLY 1273
B
 A 6 T 22
C
 A 11 T 20
D
 A 0 A 8
E
 T 25 A 50
F
 A 1 A 19
G
 A 1 A 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 9HDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 35Right-handed alpha
Helix 2
AA2
A
50 54Right-handed 310
Helix 3
AA3
A
120 132Right-handed alpha
Helix 4
AA4
A
151 155Right-handed 310
Helix 5
AA5
A
162 175Right-handed alpha
Helix 6
AA6
A
180 185Right-handed alpha
Helix 7
AA7
A
212 215Right-handed 310
Helix 8
AA8
A
253 257Right-handed 310
Helix 9
AA9
A
259 278Right-handed alpha
Helix 10
AB1
A
283 311Right-handed alpha
Helix 11
AB2
A
311 326Right-handed alpha
Helix 12
AB3
A
327 330Right-handed 310
Helix 13
AB4
A
333 369Right-handed alpha
Helix 14
AB5
A
374 382Right-handed alpha
Helix 15
AB6
A
403 421Right-handed alpha
Helix 16
AB7
A
425 435Right-handed alpha
Helix 17
AB8
A
442 450Right-handed alpha
Helix 18
AB9
A
454 463Right-handed alpha
Helix 19
AC1
A
477 503Right-handed alpha
Helix 20
AC2
A
506 510Right-handed 310
Helix 21
AC3
A
526 528Right-handed 310
Helix 22
AC4
A
537 553Right-handed alpha
Helix 23
AC5
A
554 559Right-handed alpha
Helix 24
AC6
A
572 589Right-handed alpha
Helix 25
AC7
A
603 608Right-handed alpha
Helix 26
AC8
A
609 620Right-handed alpha
Helix 27
AC9
A
624 634Right-handed alpha
Helix 28
AD1
A
663 682Right-handed alpha
Helix 29
AD2
A
710 730Right-handed alpha
Helix 30
AD3
A
746 757Right-handed alpha
Helix 31
AD4
A
776 778Right-handed 310
Helix 32
AD5
A
779 799Right-handed alpha
Helix 33
AD6
A
805 828Right-handed alpha
Helix 34
AD7
A
833 849Right-handed alpha
Helix 35
AD8
A
857 862Right-handed alpha
Helix 36
AD9
A
866 870Right-handed 310
Helix 37
AE1
A
874 884Right-handed alpha
Helix 38
AE2
A
886 892Right-handed alpha
Helix 39
AE3
A
898 902Right-handed 310
Helix 40
AE4
A
910 915Right-handed alpha
Helix 41
AE5
A
932 947Right-handed alpha
Helix 42
AE6
A
961 967Right-handed alpha
Helix 43
AE7
A
970 981Right-handed alpha
Helix 44
AE8
A
984 989Right-handed alpha
Helix 45
AE9
A
990 994Right-handed 310
Helix 46
AF1
A
998 1005Right-handed alpha
Helix 47
AF2
A
1006 1008Right-handed 310
Helix 48
AF3
A
1009 1022Right-handed alpha
Helix 49
AF4
A
1022 1031Right-handed alpha
Helix 50
AF5
A
1034 1042Right-handed alpha
Helix 51
AF6
A
1048 1061Right-handed alpha
Helix 52
AF7
A
1067 1076Right-handed alpha
Helix 53
AF8
A
1081 1095Right-handed alpha
Helix 54
AF9
A
1098 1110Right-handed alpha
Helix 55
AG1
A
1115 1123Right-handed alpha
Helix 56
AG2
A
1139 1145Right-handed alpha
Helix 57
AG3
A
1150 1164Right-handed alpha
Helix 58
AG4
A
1172 1178Right-handed alpha
Helix 59
AG5
A
1183 1188Right-handed 310
Helix 60
AG6
A
1189 1207Right-handed alpha
Helix 61
AG7
A
1215 1238Right-handed alpha
Helix 62
AG8
A
1239 1258Right-handed alpha
Helix 63
AG9
A
1259 1267Right-handed alpha
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There are 9 sheets in PDB entry 9HDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
74 78anti-parallel
Strand 3
A
38 42anti-parallel
Strand 4
A
8 14parallel
Strand 5
A
232 237anti-parallel
Strand 6
A
217 223anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 91first strand
Strand 2
A
97 104anti-parallel
Strand 3
A
107 115anti-parallel
Strand 4
A
140 145parallel
Strand 5
A
205 210anti-parallel
Strand 6
A
177 179anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 195first strand
Strand 2
A
200 202anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 394first strand
Strand 2
A
400 401anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 536first strand
Strand 2
A
512 518anti-parallel
Strand 3
A
638 643parallel
Strand 4
A
646 647anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
530 536first strand
Strand 2
A
512 518anti-parallel
Strand 3
A
638 643parallel
Strand 4
A
651 652anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
697 700first strand
Strand 2
A
703 709anti-parallel
Strand 3
A
593 600anti-parallel
Strand 4
A
739 744anti-parallel
Strand 5
A
760 761parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
688 690first strand
Strand 2
A
693 695anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
765 768first strand
Strand 2
A
771 774anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il