Analysis of interatomic Contacts of Structural Units in PDB entry:
9HE8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HE8 entry

There are 3 chains in PDB entry 9HE8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 540
B	GLY -7	ASP 540
C	MET 1	PRO 153

There are 16 helices in PDB entry 9HE8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	171	174	Right-handed 310
Helix 2	AA2	A	448	452	Right-handed 310
Helix 3	AA3	A	494	496	Right-handed 310
Helix 4	AA4	A	497	502	Right-handed alpha
Helix 5	AA5	B	171	174	Right-handed 310
Helix 6	AA6	B	448	452	Right-handed 310
Helix 7	AA7	B	494	496	Right-handed 310
Helix 8	AA8	B	497	502	Right-handed alpha
Helix 9	AA9	C	170	174	Right-handed 310
Helix 10	AB1	C	448	452	Right-handed 310
Helix 11	AB2	C	494	496	Right-handed 310
Helix 12	AB3	C	497	502	Right-handed alpha
Helix 13	AB4	D	171	174	Right-handed 310
Helix 14	AB5	D	448	452	Right-handed 310
Helix 15	AB6	D	494	496	Right-handed 310
Helix 16	AB7	D	497	502	Right-handed alpha

There are 55 sheets in PDB entry 9HE8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	4	first strand
Strand 2	A	315	317	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	20	first strand
Strand 2	A	23	29	anti-parallel
Strand 3	A	38	42	anti-parallel
Strand 4	A	49	51	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	348	349	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	83	91	anti-parallel
Strand 3	A	76	80	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	83	91	anti-parallel
Strand 3	A	101	108	anti-parallel
Strand 4	A	119	122	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	138	145	anti-parallel
Strand 3	A	154	163	anti-parallel
Strand 4	A	168	169	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	132	first strand
Strand 2	A	138	145	anti-parallel
Strand 3	A	154	163	anti-parallel
Strand 4	A	175	178	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	194	first strand
Strand 2	A	197	204	anti-parallel
Strand 3	A	212	218	anti-parallel
Strand 4	A	227	228	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	187	194	first strand
Strand 2	A	197	204	anti-parallel
Strand 3	A	212	218	anti-parallel
Strand 4	A	235	236	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	255	first strand
Strand 2	A	261	267	anti-parallel
Strand 3	A	290	298	anti-parallel
Strand 4	A	304	306	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	335	first strand
Strand 2	A	527	537	anti-parallel
Strand 3	A	390	398	anti-parallel
Strand 4	A	462	469	anti-parallel
Strand 5	A	472	478	anti-parallel
Strand 6	A	485	486	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	361	first strand
Strand 2	A	364	368	anti-parallel
Strand 3	A	527	537	anti-parallel
Strand 4	A	390	398	anti-parallel
Strand 5	A	462	469	anti-parallel
Strand 6	A	472	478	anti-parallel
Strand 7	A	491	492	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	385	first strand
Strand 2	A	513	520	anti-parallel
Strand 3	A	406	415	anti-parallel
Strand 4	A	418	427	anti-parallel
Strand 5	A	431	440	anti-parallel
Strand 6	A	443	446	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	385	first strand
Strand 2	A	513	520	anti-parallel
Strand 3	A	406	415	anti-parallel
Strand 4	A	418	427	anti-parallel
Strand 5	A	431	440	anti-parallel
Strand 6	A	453	454	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	4	first strand
Strand 2	B	315	317	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	20	first strand
Strand 2	B	23	29	anti-parallel
Strand 3	B	38	42	anti-parallel
Strand 4	B	49	51	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	348	349	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	83	91	anti-parallel
Strand 3	B	76	80	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	83	91	anti-parallel
Strand 3	B	101	108	anti-parallel
Strand 4	B	119	122	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	132	first strand
Strand 2	B	138	145	anti-parallel
Strand 3	B	154	163	anti-parallel
Strand 4	B	168	169	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	132	first strand
Strand 2	B	138	145	anti-parallel
Strand 3	B	154	163	anti-parallel
Strand 4	B	175	178	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	194	first strand
Strand 2	B	197	204	anti-parallel
Strand 3	B	212	218	anti-parallel
Strand 4	B	227	228	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	194	first strand
Strand 2	B	197	204	anti-parallel
Strand 3	B	212	218	anti-parallel
Strand 4	B	235	236	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	251	255	first strand
Strand 2	B	261	267	anti-parallel
Strand 3	B	290	298	anti-parallel
Strand 4	B	304	306	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	335	first strand
Strand 2	B	527	537	anti-parallel
Strand 3	B	390	398	anti-parallel
Strand 4	B	462	469	anti-parallel
Strand 5	B	472	478	anti-parallel
Strand 6	B	485	486	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	358	361	first strand
Strand 2	B	364	368	anti-parallel
Strand 3	B	527	537	anti-parallel
Strand 4	B	390	398	anti-parallel
Strand 5	B	462	469	anti-parallel
Strand 6	B	472	478	anti-parallel
Strand 7	B	491	492	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	385	first strand
Strand 2	B	513	520	anti-parallel
Strand 3	B	406	415	anti-parallel
Strand 4	B	418	427	anti-parallel
Strand 5	B	431	440	anti-parallel
Strand 6	B	443	446	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	380	385	first strand
Strand 2	B	513	520	anti-parallel
Strand 3	B	406	415	anti-parallel
Strand 4	B	418	427	anti-parallel
Strand 5	B	431	440	anti-parallel
Strand 6	B	453	454	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	4	first strand
Strand 2	C	315	317	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	20	first strand
Strand 2	C	23	29	anti-parallel
Strand 3	C	38	42	anti-parallel
Strand 4	C	49	51	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	348	349	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	83	91	anti-parallel
Strand 3	C	76	80	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	72	first strand
Strand 2	C	83	91	anti-parallel
Strand 3	C	101	108	anti-parallel
Strand 4	C	119	122	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	132	first strand
Strand 2	C	138	145	anti-parallel
Strand 3	C	154	161	anti-parallel
Strand 4	C	175	178	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	194	first strand
Strand 2	C	197	204	anti-parallel
Strand 3	C	212	218	anti-parallel
Strand 4	C	227	228	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	194	first strand
Strand 2	C	197	204	anti-parallel
Strand 3	C	212	218	anti-parallel
Strand 4	C	235	236	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	251	255	first strand
Strand 2	C	261	267	anti-parallel
Strand 3	C	290	298	anti-parallel
Strand 4	C	304	306	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	335	first strand
Strand 2	C	527	537	anti-parallel
Strand 3	C	390	398	anti-parallel
Strand 4	C	462	469	anti-parallel
Strand 5	C	472	478	anti-parallel
Strand 6	C	485	486	anti-parallel

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There are 7 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	358	361	first strand
Strand 2	C	364	368	anti-parallel
Strand 3	C	527	537	anti-parallel
Strand 4	C	390	398	anti-parallel
Strand 5	C	462	469	anti-parallel
Strand 6	C	472	478	anti-parallel
Strand 7	C	491	492	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	385	first strand
Strand 2	C	513	520	anti-parallel
Strand 3	C	406	415	anti-parallel
Strand 4	C	418	427	anti-parallel
Strand 5	C	431	440	anti-parallel
Strand 6	C	443	446	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	385	first strand
Strand 2	C	513	520	anti-parallel
Strand 3	C	406	415	anti-parallel
Strand 4	C	418	427	anti-parallel
Strand 5	C	431	440	anti-parallel
Strand 6	C	453	454	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	4	first strand
Strand 2	D	315	317	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	20	first strand
Strand 2	D	23	29	anti-parallel
Strand 3	D	38	42	anti-parallel
Strand 4	D	49	51	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	348	349	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	83	91	anti-parallel
Strand 3	D	76	80	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	71	72	first strand
Strand 2	D	83	91	anti-parallel
Strand 3	D	101	108	anti-parallel
Strand 4	D	119	122	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	132	first strand
Strand 2	D	138	145	anti-parallel
Strand 3	D	154	163	anti-parallel
Strand 4	D	168	169	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	132	first strand
Strand 2	D	138	145	anti-parallel
Strand 3	D	154	163	anti-parallel
Strand 4	D	175	178	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	194	first strand
Strand 2	D	197	204	anti-parallel
Strand 3	D	212	218	anti-parallel
Strand 4	D	227	228	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	187	194	first strand
Strand 2	D	197	204	anti-parallel
Strand 3	D	212	218	anti-parallel
Strand 4	D	235	236	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	251	255	first strand
Strand 2	D	261	267	anti-parallel
Strand 3	D	290	298	anti-parallel
Strand 4	D	304	306	anti-parallel

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There are 6 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	333	335	first strand
Strand 2	D	527	537	anti-parallel
Strand 3	D	390	398	anti-parallel
Strand 4	D	462	469	anti-parallel
Strand 5	D	472	478	anti-parallel
Strand 6	D	485	486	anti-parallel

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There are 7 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	358	361	first strand
Strand 2	D	364	368	anti-parallel
Strand 3	D	527	537	anti-parallel
Strand 4	D	390	398	anti-parallel
Strand 5	D	462	469	anti-parallel
Strand 6	D	472	478	anti-parallel
Strand 7	D	491	492	anti-parallel

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There are 6 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	385	first strand
Strand 2	D	513	520	anti-parallel
Strand 3	D	406	415	anti-parallel
Strand 4	D	418	427	anti-parallel
Strand 5	D	431	440	anti-parallel
Strand 6	D	443	446	anti-parallel

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There are 6 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	385	first strand
Strand 2	D	513	520	anti-parallel
Strand 3	D	406	415	anti-parallel
Strand 4	D	418	427	anti-parallel
Strand 5	D	431	440	anti-parallel
Strand 6	D	453	454	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HE8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HE8