Analysis of interatomic Contacts of Structural Units in PDB entry:
9HEE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HEE entry

There are 5 chains in PDB entry 9HEE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 67	SER 389
B	TRP 67	SER 389
C	TRP 67	SER 389
D	TRP 67	SER 389
E	TRP 67	GLN 193

There are111 helices in PDB entry 9HEE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	68	83	Right-handed alpha
Helix 2	AA2	A	92	107	Right-handed alpha
Helix 3	AA3	A	119	129	Right-handed alpha
Helix 4	AA4	A	139	141	Right-handed 310
Helix 5	AA5	A	142	147	Right-handed alpha
Helix 6	AA6	A	168	177	Right-handed alpha
Helix 7	AA7	A	188	193	Right-handed alpha
Helix 8	AA8	A	195	199	Right-handed 310
Helix 9	AA9	A	225	240	Right-handed alpha
Helix 10	AB1	A	244	257	Right-handed alpha
Helix 11	AB2	A	257	279	Right-handed alpha
Helix 12	AB3	A	317	327	Right-handed alpha
Helix 13	AB4	A	346	351	Right-handed alpha
Helix 14	AB5	A	374	388	Right-handed alpha
Helix 15	AB6	B	68	83	Right-handed alpha
Helix 16	AB7	B	92	107	Right-handed alpha
Helix 17	AB8	B	119	129	Right-handed alpha
Helix 18	AB9	B	139	141	Right-handed 310
Helix 19	AC1	B	142	147	Right-handed alpha
Helix 20	AC2	B	168	177	Right-handed alpha
Helix 21	AC3	B	188	193	Right-handed alpha
Helix 22	AC4	B	195	199	Right-handed 310
Helix 23	AC5	B	225	240	Right-handed alpha
Helix 24	AC6	B	244	257	Right-handed alpha
Helix 25	AC7	B	257	279	Right-handed alpha
Helix 26	AC8	B	317	327	Right-handed alpha
Helix 27	AC9	B	346	351	Right-handed alpha
Helix 28	AD1	B	374	388	Right-handed alpha
Helix 29	AD2	C	68	83	Right-handed alpha
Helix 30	AD3	C	92	107	Right-handed alpha
Helix 31	AD4	C	119	129	Right-handed alpha
Helix 32	AD5	C	139	141	Right-handed 310
Helix 33	AD6	C	142	147	Right-handed alpha
Helix 34	AD7	C	168	177	Right-handed alpha
Helix 35	AD8	C	188	193	Right-handed alpha
Helix 36	AD9	C	195	199	Right-handed 310
Helix 37	AE1	C	225	240	Right-handed alpha
Helix 38	AE2	C	244	257	Right-handed alpha
Helix 39	AE3	C	257	279	Right-handed alpha
Helix 40	AE4	C	297	302	Right-handed alpha
Helix 41	AE5	C	317	327	Right-handed alpha
Helix 42	AE6	C	374	387	Right-handed alpha
Helix 43	AE7	D	68	83	Right-handed alpha
Helix 44	AE8	D	92	107	Right-handed alpha
Helix 45	AE9	D	119	129	Right-handed alpha
Helix 46	AF1	D	139	141	Right-handed 310
Helix 47	AF2	D	142	147	Right-handed alpha
Helix 48	AF3	D	168	177	Right-handed alpha
Helix 49	AF4	D	188	193	Right-handed alpha
Helix 50	AF5	D	195	199	Right-handed 310
Helix 51	AF6	D	225	240	Right-handed alpha
Helix 52	AF7	D	244	257	Right-handed alpha
Helix 53	AF8	D	257	279	Right-handed alpha
Helix 54	AF9	D	317	328	Right-handed alpha
Helix 55	AG1	D	346	351	Right-handed alpha
Helix 56	AG2	D	374	388	Right-handed alpha
Helix 57	AG3	E	68	83	Right-handed alpha
Helix 58	AG4	E	92	107	Right-handed alpha
Helix 59	AG5	E	119	129	Right-handed alpha
Helix 60	AG6	E	139	141	Right-handed 310
Helix 61	AG7	E	142	147	Right-handed alpha
Helix 62	AG8	E	168	177	Right-handed alpha
Helix 63	AG9	E	188	193	Right-handed alpha
Helix 64	AH1	E	195	199	Right-handed 310
Helix 65	AH2	E	225	240	Right-handed alpha
Helix 66	AH3	E	244	257	Right-handed alpha
Helix 67	AH4	E	257	278	Right-handed alpha
Helix 68	AH5	E	317	327	Right-handed alpha
Helix 69	AH6	E	346	351	Right-handed alpha
Helix 70	AH7	E	374	388	Right-handed alpha
Helix 71	AH8	F	68	83	Right-handed alpha
Helix 72	AH9	F	92	107	Right-handed alpha
Helix 73	AI1	F	119	129	Right-handed alpha
Helix 74	AI2	F	139	141	Right-handed 310
Helix 75	AI3	F	142	147	Right-handed alpha
Helix 76	AI4	F	168	177	Right-handed alpha
Helix 77	AI5	F	188	193	Right-handed alpha
Helix 78	AI6	F	195	199	Right-handed 310
Helix 79	AI7	F	225	240	Right-handed alpha
Helix 80	AI8	F	244	257	Right-handed alpha
Helix 81	AI9	F	257	279	Right-handed alpha
Helix 82	AJ1	F	317	327	Right-handed alpha
Helix 83	AJ2	F	374	388	Right-handed alpha
Helix 84	AJ3	G	68	83	Right-handed alpha
Helix 85	AJ4	G	92	107	Right-handed alpha
Helix 86	AJ5	G	119	129	Right-handed alpha
Helix 87	AJ6	G	139	141	Right-handed 310
Helix 88	AJ7	G	142	147	Right-handed alpha
Helix 89	AJ8	G	168	177	Right-handed alpha
Helix 90	AJ9	G	188	193	Right-handed alpha
Helix 91	AK1	G	195	199	Right-handed 310
Helix 92	AK2	G	225	240	Right-handed alpha
Helix 93	AK3	G	244	257	Right-handed alpha
Helix 94	AK4	G	257	279	Right-handed alpha
Helix 95	AK5	G	317	327	Right-handed alpha
Helix 96	AK6	G	346	351	Right-handed alpha
Helix 97	AK7	G	374	388	Right-handed alpha
Helix 98	AK8	H	68	83	Right-handed alpha
Helix 99	AK9	H	92	107	Right-handed alpha
Helix 100	AL1	H	119	129	Right-handed alpha
Helix 101	AL2	H	139	141	Right-handed 310
Helix 102	AL3	H	142	147	Right-handed alpha
Helix 103	AL4	H	168	177	Right-handed alpha
Helix 104	AL5	H	188	193	Right-handed alpha
Helix 105	AL6	H	195	199	Right-handed 310
Helix 106	AL7	H	225	240	Right-handed alpha
Helix 107	AL8	H	244	257	Right-handed alpha
Helix 108	AL9	H	257	279	Right-handed alpha
Helix 109	AM1	H	317	327	Right-handed alpha
Helix 110	AM2	H	346	351	Right-handed alpha
Helix 111	AM3	H	374	388	Right-handed alpha

There are 16 sheets in PDB entry 9HEE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	90	first strand
Strand 2	A	220	224	anti-parallel
Strand 3	A	202	205	anti-parallel
Strand 4	A	181	184	parallel
Strand 5	A	151	157	parallel
Strand 6	A	111	115	parallel
Strand 7	A	134	138	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	286	first strand
Strand 2	A	309	314	anti-parallel
Strand 3	A	365	369	anti-parallel
Strand 4	A	343	345	anti-parallel
Strand 5	A	332	333	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	90	first strand
Strand 2	B	220	224	anti-parallel
Strand 3	B	202	205	anti-parallel
Strand 4	B	181	184	parallel
Strand 5	B	151	157	parallel
Strand 6	B	111	115	parallel
Strand 7	B	134	138	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	286	first strand
Strand 2	B	309	314	anti-parallel
Strand 3	B	365	369	anti-parallel
Strand 4	B	343	345	anti-parallel
Strand 5	B	332	333	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	90	first strand
Strand 2	C	220	224	anti-parallel
Strand 3	C	202	205	anti-parallel
Strand 4	C	181	184	parallel
Strand 5	C	151	157	parallel
Strand 6	C	111	114	parallel
Strand 7	C	134	135	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	286	first strand
Strand 2	C	309	314	anti-parallel
Strand 3	C	365	369	anti-parallel
Strand 4	C	343	345	anti-parallel
Strand 5	C	332	333	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	90	first strand
Strand 2	D	220	224	anti-parallel
Strand 3	D	202	205	anti-parallel
Strand 4	D	181	184	parallel
Strand 5	D	151	157	parallel
Strand 6	D	111	115	parallel
Strand 7	D	134	138	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	286	first strand
Strand 2	D	309	314	anti-parallel
Strand 3	D	365	369	anti-parallel
Strand 4	D	343	345	anti-parallel
Strand 5	D	332	333	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	90	first strand
Strand 2	E	220	224	anti-parallel
Strand 3	E	202	205	anti-parallel
Strand 4	E	181	184	parallel
Strand 5	E	151	157	parallel
Strand 6	E	111	115	parallel
Strand 7	E	134	138	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	282	286	first strand
Strand 2	E	309	314	anti-parallel
Strand 3	E	365	369	anti-parallel
Strand 4	E	343	345	anti-parallel
Strand 5	E	332	333	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	86	90	first strand
Strand 2	F	220	224	anti-parallel
Strand 3	F	202	205	anti-parallel
Strand 4	F	181	184	parallel
Strand 5	F	151	157	parallel
Strand 6	F	111	114	parallel
Strand 7	F	134	135	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	282	286	first strand
Strand 2	F	309	314	anti-parallel
Strand 3	F	365	369	anti-parallel
Strand 4	F	343	345	anti-parallel
Strand 5	F	332	333	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	90	first strand
Strand 2	G	220	224	anti-parallel
Strand 3	G	202	205	anti-parallel
Strand 4	G	181	184	parallel
Strand 5	G	151	157	parallel
Strand 6	G	111	114	parallel
Strand 7	G	134	135	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	282	286	first strand
Strand 2	G	309	314	anti-parallel
Strand 3	G	365	369	anti-parallel
Strand 4	G	343	345	anti-parallel
Strand 5	G	332	333	parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	86	90	first strand
Strand 2	H	220	224	anti-parallel
Strand 3	H	202	205	anti-parallel
Strand 4	H	181	184	parallel
Strand 5	H	151	157	parallel
Strand 6	H	111	114	parallel
Strand 7	H	134	135	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	282	286	first strand
Strand 2	H	311	314	anti-parallel
Strand 3	H	365	369	anti-parallel
Strand 4	H	343	345	anti-parallel
Strand 5	H	332	333	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HEE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HEE