Analysis of interatomic Contacts of Structural Units in PDB entry:
9HEJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HEJ entry

There are 6 chains in PDB entry 9HEJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 152	ASP 1030
B	LEU 264	ASP 926
D	VAL 2	ARG 142
E	HIS 3	HIS 144
F	SER 47	ASN 347
G	PRO 36	VAL 44

There are 52 helices in PDB entry 9HEJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	189	200	Right-handed alpha
Helix 2	AA2	A	234	238	Right-handed 310
Helix 3	AA3	A	296	308	Right-handed alpha
Helix 4	AA4	A	341	345	Right-handed 310
Helix 5	AA5	A	356	360	Right-handed 310
Helix 6	AA6	A	403	415	Right-handed alpha
Helix 7	AA7	A	448	452	Right-handed 310
Helix 8	AA8	A	474	476	Right-handed 310
Helix 9	AA9	A	504	507	Right-handed 310
Helix 10	AB1	A	508	519	Right-handed alpha
Helix 11	AB2	A	553	557	Right-handed 310
Helix 12	AB3	A	613	624	Right-handed alpha
Helix 13	AB4	A	658	662	Right-handed 310
Helix 14	AB5	A	856	868	Right-handed alpha
Helix 15	AB6	A	901	905	Right-handed 310
Helix 16	AB7	A	959	970	Right-handed alpha
Helix 17	AB8	B	296	306	Right-handed alpha
Helix 18	AB9	B	341	345	Right-handed 310
Helix 19	AC1	B	403	415	Right-handed alpha
Helix 20	AC2	B	448	452	Right-handed 310
Helix 21	AC3	B	474	476	Right-handed 310
Helix 22	AC4	B	508	519	Right-handed alpha
Helix 23	AC5	B	568	572	Right-handed 310
Helix 24	AC6	B	613	624	Right-handed alpha
Helix 25	AC7	B	749	760	Right-handed alpha
Helix 26	AC8	B	794	798	Right-handed 310
Helix 27	AC9	B	809	813	Right-handed 310
Helix 28	AD1	B	856	868	Right-handed alpha
Helix 29	AD2	B	916	920	Right-handed 310
Helix 30	AD3	D	4	19	Right-handed alpha
Helix 31	AD4	D	21	37	Right-handed alpha
Helix 32	AD5	D	38	44	Right-handed 310
Helix 33	AD6	D	53	73	Right-handed alpha
Helix 34	AD7	D	76	81	Right-handed alpha
Helix 35	AD8	D	81	91	Right-handed alpha
Helix 36	AD9	D	96	114	Right-handed alpha
Helix 37	AE1	D	119	139	Right-handed alpha
Helix 38	AE2	E	5	16	Right-handed alpha
Helix 39	AE3	E	17	19	Right-handed 310
Helix 40	AE4	E	23	36	Right-handed alpha
Helix 41	AE5	E	37	47	Right-handed 310
Helix 42	AE6	E	51	57	Right-handed alpha
Helix 43	AE7	E	58	77	Right-handed alpha
Helix 44	AE8	E	81	86	Right-handed alpha
Helix 45	AE9	E	86	96	Right-handed alpha
Helix 46	AF1	E	101	120	Right-handed alpha
Helix 47	AF2	E	121	123	Right-handed 310
Helix 48	AF3	E	124	144	Right-handed alpha
Helix 49	AF4	F	141	146	Right-handed alpha
Helix 50	AF5	F	154	162	Right-handed 310
Helix 51	AF6	F	246	256	Right-handed alpha
Helix 52	AF7	F	336	346	Right-handed alpha

There are 33 sheets in PDB entry 9HEJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	162	first strand
Strand 2	A	169	176	anti-parallel
Strand 3	A	255	257	anti-parallel
Strand 4	A	207	209	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	162	first strand
Strand 2	A	169	176	anti-parallel
Strand 3	A	179	183	anti-parallel
Strand 4	A	221	223	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	269	first strand
Strand 2	A	276	283	anti-parallel
Strand 3	A	362	366	anti-parallel
Strand 4	A	313	316	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	269	first strand
Strand 2	A	276	283	anti-parallel
Strand 3	A	286	290	anti-parallel
Strand 4	A	327	330	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	380	first strand
Strand 2	A	383	390	anti-parallel
Strand 3	A	469	472	anti-parallel
Strand 4	A	419	421	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	380	first strand
Strand 2	A	383	390	anti-parallel
Strand 3	A	393	397	anti-parallel
Strand 4	A	436	438	parallel
Strand 5	A	456	457	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	482	first strand
Strand 2	A	488	494	anti-parallel
Strand 3	A	574	577	anti-parallel
Strand 4	A	524	527	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	482	first strand
Strand 2	A	488	494	anti-parallel
Strand 3	A	499	502	anti-parallel
Strand 4	A	540	541	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	543	545	first strand
Strand 2	A	559	561	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	586	first strand
Strand 2	A	593	600	anti-parallel
Strand 3	A	679	682	anti-parallel
Strand 4	A	629	631	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	583	586	first strand
Strand 2	A	593	600	anti-parallel
Strand 3	A	603	607	anti-parallel
Strand 4	A	644	646	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	650	first strand
Strand 2	A	664	665	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	831	832	first strand
Strand 2	A	823	828	anti-parallel
Strand 3	A	836	842	anti-parallel
Strand 4	A	922	925	anti-parallel
Strand 5	A	873	875	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	931	932	first strand
Strand 2	A	939	946	anti-parallel
Strand 3	A	1026	1028	anti-parallel
Strand 4	A	975	978	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	931	932	first strand
Strand 2	A	939	946	anti-parallel
Strand 3	A	949	953	anti-parallel
Strand 4	A	991	993	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	270	first strand
Strand 2	B	276	283	anti-parallel
Strand 3	B	362	366	anti-parallel
Strand 4	B	313	316	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	270	first strand
Strand 2	B	276	283	anti-parallel
Strand 3	B	286	290	anti-parallel
Strand 4	B	327	330	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	376	first strand
Strand 2	B	383	390	anti-parallel
Strand 3	B	469	472	anti-parallel
Strand 4	B	419	421	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	372	376	first strand
Strand 2	B	383	390	anti-parallel
Strand 3	B	393	397	anti-parallel
Strand 4	B	436	438	parallel
Strand 5	B	456	457	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	477	480	first strand
Strand 2	B	488	494	anti-parallel
Strand 3	B	574	577	anti-parallel
Strand 4	B	524	528	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	501	502	first strand
Strand 2	B	540	541	parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	584	586	first strand
Strand 2	B	595	600	anti-parallel
Strand 3	B	603	607	anti-parallel
Strand 4	B	644	646	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	629	631	first strand
Strand 2	B	681	682	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	649	650	first strand
Strand 2	B	664	665	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	722	first strand
Strand 2	B	729	736	anti-parallel
Strand 3	B	815	818	anti-parallel
Strand 4	B	765	769	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	722	first strand
Strand 2	B	729	736	anti-parallel
Strand 3	B	739	743	anti-parallel
Strand 4	B	781	783	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	831	834	first strand
Strand 2	B	823	828	anti-parallel
Strand 3	B	836	843	anti-parallel
Strand 4	B	922	925	anti-parallel
Strand 5	B	873	875	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	831	834	first strand
Strand 2	B	823	828	anti-parallel
Strand 3	B	836	843	anti-parallel
Strand 4	B	846	850	anti-parallel
Strand 5	B	888	890	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	49	first strand
Strand 2	F	65	68	anti-parallel
Strand 3	F	74	75	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	51	52	first strand
Strand 2	G	42	43	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	56	58	first strand
Strand 2	F	86	88	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	108	109	first strand
Strand 2	F	238	243	anti-parallel
Strand 3	F	219	224	anti-parallel
Strand 4	F	299	303	anti-parallel
Strand 5	F	310	318	anti-parallel
Strand 6	F	328	332	anti-parallel
Strand 7	F	279	282	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	170	172	first strand
Strand 2	F	163	166	anti-parallel
Strand 3	F	117	121	anti-parallel
Strand 4	F	127	132	anti-parallel
Strand 5	F	137	140	anti-parallel
Strand 6	F	189	193	anti-parallel
Strand 7	F	174	179	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HEJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HEJ