Analysis of interatomic Contacts of Structural Units in PDB entry:
9HF3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HF3 entry

There are 7 chains in PDB entry 9HF3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	PRO 362
B	ALA 2	PRO 362
C	ALA 2	PRO 362
D	ALA 2	PRO 362
E	ALA 2	PRO 362
F	ALA 2	PRO 362
G	ALA 2	PRO 362

There are 98 helices in PDB entry 9HF3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	11	Right-handed alpha
Helix 2	AA2	A	32	54	Right-handed alpha
Helix 3	AA3	A	73	88	Right-handed alpha
Helix 4	AA4	A	89	92	Right-handed 310
Helix 5	AA5	A	100	131	Right-handed alpha
Helix 6	AA6	A	131	161	Right-handed alpha
Helix 7	AA7	A	194	203	Right-handed alpha
Helix 8	AA8	A	207	236	Right-handed alpha
Helix 9	AA9	A	237	240	Right-handed 310
Helix 10	AB1	A	250	255	Right-handed 310
Helix 11	AB2	A	268	299	Right-handed alpha
Helix 12	AB3	A	325	336	Right-handed alpha
Helix 13	AB4	A	337	340	Right-handed 310
Helix 14	AB5	A	341	357	Right-handed alpha
Helix 15	AB6	B	3	11	Right-handed alpha
Helix 16	AB7	B	32	54	Right-handed alpha
Helix 17	AB8	B	73	88	Right-handed alpha
Helix 18	AB9	B	89	92	Right-handed 310
Helix 19	AC1	B	100	131	Right-handed alpha
Helix 20	AC2	B	131	161	Right-handed alpha
Helix 21	AC3	B	194	203	Right-handed alpha
Helix 22	AC4	B	207	236	Right-handed alpha
Helix 23	AC5	B	237	240	Right-handed 310
Helix 24	AC6	B	250	255	Right-handed 310
Helix 25	AC7	B	268	299	Right-handed alpha
Helix 26	AC8	B	325	336	Right-handed alpha
Helix 27	AC9	B	337	340	Right-handed 310
Helix 28	AD1	B	341	357	Right-handed alpha
Helix 29	AD2	C	3	11	Right-handed alpha
Helix 30	AD3	C	32	54	Right-handed alpha
Helix 31	AD4	C	73	88	Right-handed alpha
Helix 32	AD5	C	89	92	Right-handed 310
Helix 33	AD6	C	100	131	Right-handed alpha
Helix 34	AD7	C	131	161	Right-handed alpha
Helix 35	AD8	C	194	203	Right-handed alpha
Helix 36	AD9	C	207	236	Right-handed alpha
Helix 37	AE1	C	237	240	Right-handed 310
Helix 38	AE2	C	250	255	Right-handed 310
Helix 39	AE3	C	268	299	Right-handed alpha
Helix 40	AE4	C	325	336	Right-handed alpha
Helix 41	AE5	C	337	340	Right-handed 310
Helix 42	AE6	C	341	357	Right-handed alpha
Helix 43	AE7	D	3	11	Right-handed alpha
Helix 44	AE8	D	32	54	Right-handed alpha
Helix 45	AE9	D	73	88	Right-handed alpha
Helix 46	AF1	D	89	92	Right-handed 310
Helix 47	AF2	D	100	131	Right-handed alpha
Helix 48	AF3	D	131	161	Right-handed alpha
Helix 49	AF4	D	194	203	Right-handed alpha
Helix 50	AF5	D	207	236	Right-handed alpha
Helix 51	AF6	D	237	240	Right-handed 310
Helix 52	AF7	D	250	255	Right-handed 310
Helix 53	AF8	D	268	299	Right-handed alpha
Helix 54	AF9	D	325	336	Right-handed alpha
Helix 55	AG1	D	337	340	Right-handed 310
Helix 56	AG2	D	341	357	Right-handed alpha
Helix 57	AG3	E	3	11	Right-handed alpha
Helix 58	AG4	E	32	54	Right-handed alpha
Helix 59	AG5	E	73	88	Right-handed alpha
Helix 60	AG6	E	89	92	Right-handed 310
Helix 61	AG7	E	100	131	Right-handed alpha
Helix 62	AG8	E	131	161	Right-handed alpha
Helix 63	AG9	E	194	203	Right-handed alpha
Helix 64	AH1	E	207	236	Right-handed alpha
Helix 65	AH2	E	237	240	Right-handed 310
Helix 66	AH3	E	250	255	Right-handed 310
Helix 67	AH4	E	268	299	Right-handed alpha
Helix 68	AH5	E	325	336	Right-handed alpha
Helix 69	AH6	E	337	340	Right-handed 310
Helix 70	AH7	E	341	357	Right-handed alpha
Helix 71	AH8	F	3	11	Right-handed alpha
Helix 72	AH9	F	32	54	Right-handed alpha
Helix 73	AI1	F	73	88	Right-handed alpha
Helix 74	AI2	F	89	92	Right-handed 310
Helix 75	AI3	F	100	131	Right-handed alpha
Helix 76	AI4	F	131	161	Right-handed alpha
Helix 77	AI5	F	194	203	Right-handed alpha
Helix 78	AI6	F	207	236	Right-handed alpha
Helix 79	AI7	F	237	240	Right-handed 310
Helix 80	AI8	F	250	255	Right-handed 310
Helix 81	AI9	F	268	299	Right-handed alpha
Helix 82	AJ1	F	325	336	Right-handed alpha
Helix 83	AJ2	F	337	340	Right-handed 310
Helix 84	AJ3	F	341	357	Right-handed alpha
Helix 85	AJ4	G	3	11	Right-handed alpha
Helix 86	AJ5	G	32	54	Right-handed alpha
Helix 87	AJ6	G	73	88	Right-handed alpha
Helix 88	AJ7	G	89	92	Right-handed 310
Helix 89	AJ8	G	100	131	Right-handed alpha
Helix 90	AJ9	G	131	161	Right-handed alpha
Helix 91	AK1	G	194	203	Right-handed alpha
Helix 92	AK2	G	207	236	Right-handed alpha
Helix 93	AK3	G	237	240	Right-handed 310
Helix 94	AK4	G	250	255	Right-handed 310
Helix 95	AK5	G	268	299	Right-handed alpha
Helix 96	AK6	G	325	336	Right-handed alpha
Helix 97	AK7	G	337	340	Right-handed 310
Helix 98	AK8	G	341	357	Right-handed alpha

There are 7 sheets in PDB entry 9HF3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	66	first strand
Strand 2	A	262	266	anti-parallel
Strand 3	A	242	245	anti-parallel
Strand 4	A	94	95	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	66	first strand
Strand 2	B	262	266	anti-parallel
Strand 3	B	242	245	anti-parallel
Strand 4	B	94	95	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	66	first strand
Strand 2	C	262	266	anti-parallel
Strand 3	C	242	245	anti-parallel
Strand 4	C	94	95	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	66	first strand
Strand 2	D	262	266	anti-parallel
Strand 3	D	242	245	anti-parallel
Strand 4	D	94	95	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	64	66	first strand
Strand 2	E	262	266	anti-parallel
Strand 3	E	242	245	anti-parallel
Strand 4	E	94	95	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	64	66	first strand
Strand 2	F	262	266	anti-parallel
Strand 3	F	242	245	anti-parallel
Strand 4	F	94	95	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	64	66	first strand
Strand 2	G	262	266	anti-parallel
Strand 3	G	242	245	anti-parallel
Strand 4	G	94	95	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HF3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HF3