Analysis of interatomic Contacts of Structural Units in PDB entry:
9HFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HFQ entry

There are 3 chains in PDB entry 9HFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 30SER 476
B
 ILE 30SER 476
C
 ILE 30SER 476
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9HFQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
34 48Right-handed alpha
Helix 2
AA2
A
109 118Right-handed alpha
Helix 3
AA3
A
119 123Right-handed 310
Helix 4
AA4
A
134 145Right-handed alpha
Helix 5
AA5
A
168 183Right-handed alpha
Helix 6
AA6
A
198 209Right-handed alpha
Helix 7
AA7
A
210 219Right-handed alpha
Helix 8
AA8
A
227 244Right-handed alpha
Helix 9
AA9
A
247 258Right-handed alpha
Helix 10
AB1
A
260 264Right-handed 310
Helix 11
AB2
A
267 289Right-handed alpha
Helix 12
AB3
A
315 330Right-handed alpha
Helix 13
AB4
A
331 333Right-handed 310
Helix 14
AB5
A
391 396Right-handed 310
Helix 15
AB6
A
398 406Right-handed alpha
Helix 16
AB7
A
429 437Right-handed alpha
Helix 17
AB8
B
34 48Right-handed alpha
Helix 18
AB9
B
109 118Right-handed alpha
Helix 19
AC1
B
119 123Right-handed 310
Helix 20
AC2
B
134 145Right-handed alpha
Helix 21
AC3
B
168 183Right-handed alpha
Helix 22
AC4
B
198 209Right-handed alpha
Helix 23
AC5
B
210 218Right-handed alpha
Helix 24
AC6
B
227 244Right-handed alpha
Helix 25
AC7
B
247 258Right-handed alpha
Helix 26
AC8
B
260 264Right-handed 310
Helix 27
AC9
B
267 290Right-handed alpha
Helix 28
AD1
B
315 330Right-handed alpha
Helix 29
AD2
B
331 333Right-handed 310
Helix 30
AD3
B
391 396Right-handed 310
Helix 31
AD4
B
398 406Right-handed alpha
Helix 32
AD5
B
429 437Right-handed alpha
Helix 33
AD6
C
34 48Right-handed alpha
Helix 34
AD7
C
109 118Right-handed alpha
Helix 35
AD8
C
119 123Right-handed 310
Helix 36
AD9
C
134 145Right-handed alpha
Helix 37
AE1
C
168 183Right-handed alpha
Helix 38
AE2
C
198 209Right-handed alpha
Helix 39
AE3
C
210 218Right-handed alpha
Helix 40
AE4
C
227 244Right-handed alpha
Helix 41
AE5
C
247 258Right-handed alpha
Helix 42
AE6
C
260 264Right-handed 310
Helix 43
AE7
C
267 289Right-handed alpha
Helix 44
AE8
C
315 330Right-handed alpha
Helix 45
AE9
C
331 333Right-handed 310
Helix 46
AF1
C
391 396Right-handed 310
Helix 47
AF2
C
398 406Right-handed alpha
Helix 48
AF3
C
429 437Right-handed alpha
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There are 6 sheets in PDB entry 9HFQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 103first strand
Strand 2
A
89 94anti-parallel
Strand 3
A
126 129anti-parallel
Strand 4
A
148 151parallel
Strand 5
A
187 189parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
296 300first strand
Strand 2
A
467 473anti-parallel
Strand 3
A
440 443parallel
Strand 4
A
416 421parallel
Strand 5
A
341 347anti-parallel
Strand 6
A
359 366anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 103first strand
Strand 2
B
89 94anti-parallel
Strand 3
B
126 129anti-parallel
Strand 4
B
148 151parallel
Strand 5
B
187 189parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
296 300first strand
Strand 2
B
467 473anti-parallel
Strand 3
B
440 443parallel
Strand 4
B
416 421parallel
Strand 5
B
341 347anti-parallel
Strand 6
B
359 366anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 103first strand
Strand 2
C
89 94anti-parallel
Strand 3
C
126 129anti-parallel
Strand 4
C
148 151parallel
Strand 5
C
187 189parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
296 300first strand
Strand 2
C
467 473anti-parallel
Strand 3
C
440 443parallel
Strand 4
C
416 421parallel
Strand 5
C
341 347anti-parallel
Strand 6
C
359 366anti-parallel
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