Analysis of interatomic Contacts of Structural Units in PDB entry:
9HFR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HFR entry

There are 6 chains in PDB entry 9HFR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 30	SER 476
B	ILE 30	SER 476
C	ILE 30	SER 476
D	ILE 30	SER 476
E	ILE 30	SER 476
F	ILE 30	SER 476

There are 95 helices in PDB entry 9HFR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	48	Right-handed alpha
Helix 2	AA2	A	109	119	Right-handed alpha
Helix 3	AA3	A	120	123	Right-handed 310
Helix 4	AA4	A	134	145	Right-handed alpha
Helix 5	AA5	A	168	184	Right-handed alpha
Helix 6	AA6	A	198	209	Right-handed alpha
Helix 7	AA7	A	212	218	Right-handed alpha
Helix 8	AA8	A	227	244	Right-handed alpha
Helix 9	AA9	A	247	258	Right-handed alpha
Helix 10	AB1	A	260	264	Right-handed 310
Helix 11	AB2	A	267	288	Right-handed alpha
Helix 12	AB3	A	315	330	Right-handed alpha
Helix 13	AB4	A	331	333	Right-handed 310
Helix 14	AB5	A	398	406	Right-handed alpha
Helix 15	AB6	A	428	437	Right-handed alpha
Helix 16	AB7	B	34	48	Right-handed alpha
Helix 17	AB8	B	109	118	Right-handed alpha
Helix 18	AB9	B	119	123	Right-handed 310
Helix 19	AC1	B	134	145	Right-handed alpha
Helix 20	AC2	B	168	184	Right-handed alpha
Helix 21	AC3	B	196	209	Right-handed alpha
Helix 22	AC4	B	212	218	Right-handed alpha
Helix 23	AC5	B	227	244	Right-handed alpha
Helix 24	AC6	B	247	258	Right-handed alpha
Helix 25	AC7	B	260	264	Right-handed 310
Helix 26	AC8	B	267	288	Right-handed alpha
Helix 27	AC9	B	315	330	Right-handed alpha
Helix 28	AD1	B	331	333	Right-handed 310
Helix 29	AD2	B	391	396	Right-handed 310
Helix 30	AD3	B	398	406	Right-handed alpha
Helix 31	AD4	B	428	437	Right-handed alpha
Helix 32	AD5	C	34	48	Right-handed alpha
Helix 33	AD6	C	109	119	Right-handed alpha
Helix 34	AD7	C	120	123	Right-handed 310
Helix 35	AD8	C	134	145	Right-handed alpha
Helix 36	AD9	C	168	184	Right-handed alpha
Helix 37	AE1	C	198	209	Right-handed alpha
Helix 38	AE2	C	212	218	Right-handed alpha
Helix 39	AE3	C	227	244	Right-handed alpha
Helix 40	AE4	C	247	258	Right-handed alpha
Helix 41	AE5	C	260	264	Right-handed 310
Helix 42	AE6	C	267	288	Right-handed alpha
Helix 43	AE7	C	315	330	Right-handed alpha
Helix 44	AE8	C	331	333	Right-handed 310
Helix 45	AE9	C	391	396	Right-handed 310
Helix 46	AF1	C	398	406	Right-handed alpha
Helix 47	AF2	C	428	437	Right-handed alpha
Helix 48	AF3	D	34	48	Right-handed alpha
Helix 49	AF4	D	109	119	Right-handed alpha
Helix 50	AF5	D	120	123	Right-handed 310
Helix 51	AF6	D	134	145	Right-handed alpha
Helix 52	AF7	D	168	184	Right-handed alpha
Helix 53	AF8	D	198	209	Right-handed alpha
Helix 54	AF9	D	210	218	Right-handed alpha
Helix 55	AG1	D	227	244	Right-handed alpha
Helix 56	AG2	D	247	258	Right-handed alpha
Helix 57	AG3	D	260	264	Right-handed 310
Helix 58	AG4	D	267	288	Right-handed alpha
Helix 59	AG5	D	315	330	Right-handed alpha
Helix 60	AG6	D	331	333	Right-handed 310
Helix 61	AG7	D	391	396	Right-handed 310
Helix 62	AG8	D	398	406	Right-handed alpha
Helix 63	AG9	D	428	437	Right-handed alpha
Helix 64	AH1	E	34	48	Right-handed alpha
Helix 65	AH2	E	109	119	Right-handed alpha
Helix 66	AH3	E	120	123	Right-handed 310
Helix 67	AH4	E	134	145	Right-handed alpha
Helix 68	AH5	E	168	184	Right-handed alpha
Helix 69	AH6	E	198	209	Right-handed alpha
Helix 70	AH7	E	212	218	Right-handed alpha
Helix 71	AH8	E	227	244	Right-handed alpha
Helix 72	AH9	E	247	258	Right-handed alpha
Helix 73	AI1	E	260	264	Right-handed 310
Helix 74	AI2	E	267	290	Right-handed alpha
Helix 75	AI3	E	315	330	Right-handed alpha
Helix 76	AI4	E	331	333	Right-handed 310
Helix 77	AI5	E	392	396	Right-handed 310
Helix 78	AI6	E	398	406	Right-handed alpha
Helix 79	AI7	E	428	437	Right-handed alpha
Helix 80	AI8	F	34	47	Right-handed alpha
Helix 81	AI9	F	109	118	Right-handed alpha
Helix 82	AJ1	F	119	123	Right-handed 310
Helix 83	AJ2	F	134	145	Right-handed alpha
Helix 84	AJ3	F	168	184	Right-handed alpha
Helix 85	AJ4	F	196	209	Right-handed alpha
Helix 86	AJ5	F	212	218	Right-handed alpha
Helix 87	AJ6	F	227	244	Right-handed alpha
Helix 88	AJ7	F	247	258	Right-handed alpha
Helix 89	AJ8	F	260	264	Right-handed 310
Helix 90	AJ9	F	267	290	Right-handed alpha
Helix 91	AK1	F	315	330	Right-handed alpha
Helix 92	AK2	F	331	333	Right-handed 310
Helix 93	AK3	F	391	396	Right-handed 310
Helix 94	AK4	F	398	406	Right-handed alpha
Helix 95	AK5	F	428	436	Right-handed alpha

There are 12 sheets in PDB entry 9HFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	103	first strand
Strand 2	A	89	94	anti-parallel
Strand 3	A	126	129	anti-parallel
Strand 4	A	148	151	parallel
Strand 5	A	187	189	parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	300	first strand
Strand 2	A	467	473	anti-parallel
Strand 3	A	440	443	parallel
Strand 4	A	416	421	parallel
Strand 5	A	341	347	anti-parallel
Strand 6	A	359	366	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	103	first strand
Strand 2	B	89	94	anti-parallel
Strand 3	B	126	129	anti-parallel
Strand 4	B	148	150	parallel
Strand 5	B	187	189	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	299	first strand
Strand 2	B	467	473	anti-parallel
Strand 3	B	440	443	parallel
Strand 4	B	416	421	parallel
Strand 5	B	341	347	anti-parallel
Strand 6	B	359	366	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	102	first strand
Strand 2	C	90	94	anti-parallel
Strand 3	C	126	129	anti-parallel
Strand 4	C	148	151	parallel
Strand 5	C	187	189	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	300	first strand
Strand 2	C	467	473	anti-parallel
Strand 3	C	440	443	parallel
Strand 4	C	416	421	parallel
Strand 5	C	341	347	anti-parallel
Strand 6	C	359	366	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	97	103	first strand
Strand 2	D	89	94	anti-parallel
Strand 3	D	126	129	anti-parallel
Strand 4	D	148	150	parallel
Strand 5	D	187	189	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	296	300	first strand
Strand 2	D	467	473	anti-parallel
Strand 3	D	440	443	parallel
Strand 4	D	416	421	parallel
Strand 5	D	341	347	anti-parallel
Strand 6	D	359	366	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	103	first strand
Strand 2	E	89	94	anti-parallel
Strand 3	E	126	129	anti-parallel
Strand 4	E	148	150	parallel
Strand 5	E	187	189	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	296	300	first strand
Strand 2	E	467	473	anti-parallel
Strand 3	E	440	443	parallel
Strand 4	E	416	421	parallel
Strand 5	E	341	347	anti-parallel
Strand 6	E	359	366	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	97	103	first strand
Strand 2	F	89	94	anti-parallel
Strand 3	F	126	129	anti-parallel
Strand 4	F	148	150	parallel
Strand 5	F	187	189	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	296	300	first strand
Strand 2	F	467	473	anti-parallel
Strand 3	F	440	443	parallel
Strand 4	F	416	421	parallel
Strand 5	F	341	347	anti-parallel
Strand 6	F	359	366	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HFR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HFR