Analysis of interatomic Contacts of Structural Units in PDB entry:
9HG5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HG5 entry

There are 6 chains in PDB entry 9HG5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 21	TRP 810
B	LEU 22	ARG 392
C	CYS 25	PHE 342
D	GLU 26	SER 243
E	GLU 24	SER 111
F	ALA 21	ASN 428

There are 53 helices in PDB entry 9HG5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	69	Right-handed alpha
Helix 3	AA3	A	106	117	Right-handed alpha
Helix 4	AA4	A	126	128	Right-handed 310
Helix 5	AA5	A	129	144	Right-handed alpha
Helix 6	AA6	A	189	196	Right-handed alpha
Helix 7	AA7	A	215	232	Right-handed alpha
Helix 8	AA8	A	280	286	Right-handed alpha
Helix 9	AA9	A	297	314	Right-handed alpha
Helix 10	AB1	A	361	367	Right-handed alpha
Helix 11	AB2	A	378	393	Right-handed alpha
Helix 12	AB3	A	448	452	Right-handed 310
Helix 13	AB4	A	542	552	Right-handed alpha
Helix 14	AB5	A	647	651	Right-handed 310
Helix 15	AB6	A	726	730	Right-handed 310
Helix 16	AB7	B	240	244	Right-handed 310
Helix 17	AB8	C	28	33	Right-handed 310
Helix 18	AB9	C	38	44	Right-handed 310
Helix 19	AC1	C	76	80	Right-handed 310
Helix 20	AC2	C	115	127	Right-handed alpha
Helix 21	AC3	C	190	224	Right-handed alpha
Helix 22	AC4	C	247	262	Right-handed alpha
Helix 23	AC5	C	284	291	Right-handed alpha
Helix 24	AC6	C	327	336	Right-handed alpha
Helix 25	AC7	D	31	46	Right-handed alpha
Helix 26	AC8	D	47	62	Right-handed alpha
Helix 27	AC9	D	67	82	Right-handed alpha
Helix 28	AD1	D	84	99	Right-handed alpha
Helix 29	AD2	D	102	104	Right-handed 310
Helix 30	AD3	D	105	120	Right-handed alpha
Helix 31	AD4	D	122	128	Right-handed alpha
Helix 32	AD5	D	131	135	Right-handed 310
Helix 33	AD6	D	137	154	Right-handed alpha
Helix 34	AD7	D	159	189	Right-handed alpha
Helix 35	AD8	D	190	205	Right-handed alpha
Helix 36	AD9	D	208	225	Right-handed alpha
Helix 37	AE1	D	227	241	Right-handed alpha
Helix 38	AE2	E	39	45	Right-handed alpha
Helix 39	AE3	E	51	60	Right-handed alpha
Helix 40	AE4	F	39	56	Right-handed alpha
Helix 41	AE5	F	57	60	Right-handed 310
Helix 42	AE6	F	63	88	Right-handed alpha
Helix 43	AE7	F	92	97	Right-handed alpha
Helix 44	AE8	F	111	118	Right-handed alpha
Helix 45	AE9	F	125	149	Right-handed alpha
Helix 46	AF1	F	153	168	Right-handed alpha
Helix 47	AF2	F	188	208	Right-handed alpha
Helix 48	AF3	F	211	220	Right-handed alpha
Helix 49	AF4	F	222	228	Right-handed 310
Helix 50	AF5	F	235	239	Right-handed 310
Helix 51	AF6	F	240	247	Right-handed alpha
Helix 52	AF7	F	248	250	Right-handed 310
Helix 53	AF8	F	393	421	Right-handed alpha

There are 24 sheets in PDB entry 9HG5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	83	90	parallel
Strand 3	A	72	79	anti-parallel
Strand 4	F	23	32	anti-parallel
Strand 5	F	35	38	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	83	90	parallel
Strand 3	A	72	79	anti-parallel
Strand 4	F	23	32	anti-parallel
Strand 5	F	423	425	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	162	170	parallel
Strand 3	A	150	158	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	183	first strand
Strand 2	A	255	261	parallel
Strand 3	A	239	246	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	276	first strand
Strand 2	A	334	342	parallel
Strand 3	A	321	324	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	276	first strand
Strand 2	A	334	342	parallel
Strand 3	A	327	329	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	A	411	420	parallel
Strand 3	A	395	404	anti-parallel

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There are 16 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	426	first strand
Strand 2	A	440	446	anti-parallel
Strand 3	A	455	462	anti-parallel
Strand 4	A	467	475	anti-parallel
Strand 5	A	484	494	anti-parallel
Strand 6	A	506	518	anti-parallel
Strand 7	A	523	537	anti-parallel
Strand 8	A	564	579	anti-parallel
Strand 9	A	590	600	anti-parallel
Strand 10	A	608	620	anti-parallel
Strand 11	A	628	640	anti-parallel
Strand 12	A	710	720	anti-parallel
Strand 13	A	733	745	anti-parallel
Strand 14	A	767	778	anti-parallel
Strand 15	A	781	792	anti-parallel
Strand 16	A	802	806	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	673	first strand
Strand 2	A	701	705	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	386	391	anti-parallel
Strand 3	B	50	51	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	46	first strand
Strand 2	B	386	391	anti-parallel
Strand 3	B	377	381	anti-parallel
Strand 4	B	372	374	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	91	96	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	181	186	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	226	231	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	261	anti-parallel
Strand 3	B	267	271	anti-parallel
Strand 4	B	277	279	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	295	299	anti-parallel
Strand 3	B	305	309	anti-parallel
Strand 4	B	315	319	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	345	350	anti-parallel
Strand 4	B	356	361	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	100	first strand
Strand 2	C	103	107	anti-parallel
Strand 3	C	172	183	anti-parallel
Strand 4	C	157	167	anti-parallel
Strand 5	C	140	147	anti-parallel
Strand 6	C	131	135	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	97	100	first strand
Strand 2	C	103	107	anti-parallel
Strand 3	C	172	183	anti-parallel
Strand 4	C	186	187	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	230	231	first strand
Strand 2	C	243	244	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	266	269	first strand
Strand 2	C	276	278	anti-parallel
Strand 3	C	303	306	anti-parallel
Strand 4	C	317	319	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	35	first strand
Strand 2	E	72	79	anti-parallel
Strand 3	E	87	95	anti-parallel
Strand 4	E	101	107	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	230	234	first strand
Strand 2	F	173	182	anti-parallel
Strand 3	F	264	274	anti-parallel
Strand 4	F	255	261	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HG5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HG5