Analysis of interatomic Contacts of Structural Units in PDB entry:
9HG9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HG9 entry

There are 8 chains in PDB entry 9HG9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	TRP 810
B	ASN 24	TRP 393
C	ARG 30	GLN 87
D	LYS 24	SER 242
E	SER 21	SER 111
F	ALA 21	ASN 428
G	TRP 1	ASN 2
G	SER 4	PHE 7

There are 38 helices in PDB entry 9HG9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	69	Right-handed alpha
Helix 3	AA3	A	106	118	Right-handed alpha
Helix 4	AA4	A	129	145	Right-handed alpha
Helix 5	AA5	A	189	195	Right-handed alpha
Helix 6	AA6	A	215	232	Right-handed alpha
Helix 7	AA7	A	280	286	Right-handed alpha
Helix 8	AA8	A	297	315	Right-handed alpha
Helix 9	AA9	A	361	367	Right-handed alpha
Helix 10	AB1	A	378	393	Right-handed alpha
Helix 11	AB2	A	448	452	Right-handed 310
Helix 12	AB3	A	497	500	Right-handed 310
Helix 13	AB4	A	542	552	Right-handed alpha
Helix 14	AB5	A	647	651	Right-handed 310
Helix 15	AB6	A	691	695	Right-handed 310
Helix 16	AB7	A	729	731	Right-handed 310
Helix 17	AB8	C	31	38	Right-handed alpha
Helix 18	AB9	D	31	46	Right-handed alpha
Helix 19	AC1	D	47	62	Right-handed alpha
Helix 20	AC2	D	68	82	Right-handed alpha
Helix 21	AC3	D	84	99	Right-handed alpha
Helix 22	AC4	D	102	104	Right-handed 310
Helix 23	AC5	D	105	121	Right-handed alpha
Helix 24	AC6	D	137	154	Right-handed alpha
Helix 25	AC7	D	159	189	Right-handed alpha
Helix 26	AC8	D	190	205	Right-handed alpha
Helix 27	AC9	D	208	225	Right-handed alpha
Helix 28	AD1	D	227	242	Right-handed alpha
Helix 29	AD2	E	22	27	Right-handed alpha
Helix 30	AD3	E	51	60	Right-handed alpha
Helix 31	AD4	F	39	56	Right-handed alpha
Helix 32	AD5	F	57	60	Right-handed 310
Helix 33	AD6	F	63	88	Right-handed alpha
Helix 34	AD7	F	92	101	Right-handed alpha
Helix 35	AD8	F	111	118	Right-handed alpha
Helix 36	AD9	F	124	149	Right-handed alpha
Helix 37	AE1	F	153	167	Right-handed alpha
Helix 38	AE2	F	391	421	Right-handed alpha

There are 20 sheets in PDB entry 9HG9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	90	first strand
Strand 2	A	72	79	anti-parallel
Strand 3	F	23	24	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	162	169	parallel
Strand 3	A	151	158	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	183	first strand
Strand 2	A	253	261	parallel
Strand 3	A	239	247	anti-parallel
Strand 4	B	192	194	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	267	274	anti-parallel
Strand 3	A	334	342	parallel
Strand 4	A	321	324	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	294	295	first strand
Strand 2	A	267	274	anti-parallel
Strand 3	A	334	342	parallel
Strand 4	A	327	329	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	A	411	420	parallel
Strand 3	A	395	404	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	485	first strand
Strand 2	A	505	518	anti-parallel
Strand 3	A	488	495	anti-parallel
Strand 4	A	466	474	anti-parallel
Strand 5	A	455	462	anti-parallel
Strand 6	A	439	446	anti-parallel
Strand 7	A	424	433	anti-parallel
Strand 8	G	2	6	anti-parallel

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There are 14 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	484	485	first strand
Strand 2	A	505	518	anti-parallel
Strand 3	A	523	537	anti-parallel
Strand 4	A	564	579	anti-parallel
Strand 5	A	590	599	anti-parallel
Strand 6	A	608	620	anti-parallel
Strand 7	A	628	640	anti-parallel
Strand 8	A	710	720	anti-parallel
Strand 9	A	733	745	anti-parallel
Strand 10	A	767	778	anti-parallel
Strand 11	A	781	792	anti-parallel
Strand 12	A	802	806	anti-parallel
Strand 13	A	424	433	anti-parallel
Strand 14	G	2	6	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	674	first strand
Strand 2	A	700	705	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	50	first strand
Strand 2	B	387	392	anti-parallel
Strand 3	B	377	381	anti-parallel
Strand 4	B	372	374	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	67	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	80	85	anti-parallel
Strand 4	B	91	96	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	121	125	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	181	186	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	202	first strand
Strand 2	B	206	210	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	226	231	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	261	anti-parallel
Strand 3	B	266	271	anti-parallel
Strand 4	B	277	282	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	295	299	anti-parallel
Strand 3	B	305	309	anti-parallel
Strand 4	B	315	319	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	345	350	anti-parallel
Strand 4	B	356	361	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	64	65	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	87	95	anti-parallel
Strand 4	E	101	107	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	38	first strand
Strand 2	F	28	32	anti-parallel
Strand 3	F	423	425	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HG9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HG9