Analysis of interatomic Contacts of Structural Units in PDB entry:
9HGJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HGJ entry

There are 4 chains in PDB entry 9HGJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 18GLN 843
B
 GLY 16GLN 843
C
 T 39 T 62
D
 A 19 A 42
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 9HGJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 38Right-handed alpha
Helix 2
AA2
A
41 50Right-handed alpha
Helix 3
AA3
A
86 99Right-handed alpha
Helix 4
AA4
A
112 123Right-handed alpha
Helix 5
AA5
A
155 164Right-handed 310
Helix 6
AA6
A
175 180Right-handed alpha
Helix 7
AA7
A
181 185Right-handed 310
Helix 8
AA8
A
190 202Right-handed alpha
Helix 9
AA9
A
216 228Right-handed alpha
Helix 10
AB1
A
241 246Right-handed alpha
Helix 11
AB2
A
256 262Right-handed alpha
Helix 12
AB3
A
279 283Right-handed 310
Helix 13
AB4
A
285 296Right-handed alpha
Helix 14
AB5
A
306 318Right-handed alpha
Helix 15
AB6
A
335 341Right-handed 310
Helix 16
AB7
A
349 354Right-handed 310
Helix 17
AB8
A
377 386Right-handed alpha
Helix 18
AB9
A
412 422Right-handed alpha
Helix 19
AC1
A
458 464Right-handed alpha
Helix 20
AC2
A
464 474Right-handed alpha
Helix 21
AC3
A
477 491Right-handed alpha
Helix 22
AC4
A
506 518Right-handed alpha
Helix 23
AC5
A
518 526Right-handed alpha
Helix 24
AC6
A
526 531Right-handed alpha
Helix 25
AC7
A
539 546Right-handed alpha
Helix 26
AC8
A
547 558Right-handed alpha
Helix 27
AC9
A
563 572Right-handed alpha
Helix 28
AD1
A
576 595Right-handed alpha
Helix 29
AD2
A
596 600Right-handed 310
Helix 30
AD3
A
601 613Right-handed alpha
Helix 31
AD4
A
637 653Right-handed alpha
Helix 32
AD5
A
658 661Right-handed 310
Helix 33
AD6
A
668 677Right-handed alpha
Helix 34
AD7
A
679 690Right-handed alpha
Helix 35
AD8
A
702 713Right-handed alpha
Helix 36
AD9
A
723 739Right-handed alpha
Helix 37
AE1
A
756 760Right-handed 310
Helix 38
AE2
A
763 771Right-handed alpha
Helix 39
AE3
A
772 774Right-handed 310
Helix 40
AE4
A
781 793Right-handed alpha
Helix 41
AE5
A
794 797Right-handed 310
Helix 42
AE6
A
822 832Right-handed alpha
Helix 43
AE7
B
23 38Right-handed alpha
Helix 44
AE8
B
44 50Right-handed alpha
Helix 45
AE9
B
86 99Right-handed alpha
Helix 46
AF1
B
112 123Right-handed alpha
Helix 47
AF2
B
156 161Right-handed alpha
Helix 48
AF3
B
162 164Right-handed 310
Helix 49
AF4
B
175 180Right-handed alpha
Helix 50
AF5
B
181 185Right-handed 310
Helix 51
AF6
B
190 205Right-handed alpha
Helix 52
AF7
B
216 228Right-handed alpha
Helix 53
AF8
B
256 264Right-handed alpha
Helix 54
AF9
B
274 278Right-handed 310
Helix 55
AG1
B
280 284Right-handed 310
Helix 56
AG2
B
285 295Right-handed alpha
Helix 57
AG3
B
306 319Right-handed alpha
Helix 58
AG4
B
335 339Right-handed 310
Helix 59
AG5
B
349 354Right-handed 310
Helix 60
AG6
B
377 386Right-handed alpha
Helix 61
AG7
B
412 422Right-handed alpha
Helix 62
AG8
B
459 474Right-handed alpha
Helix 63
AG9
B
477 491Right-handed alpha
Helix 64
AH1
B
506 531Right-handed alpha
Helix 65
AH2
B
539 546Right-handed alpha
Helix 66
AH3
B
547 558Right-handed alpha
Helix 67
AH4
B
563 574Right-handed alpha
Helix 68
AH5
B
576 595Right-handed alpha
Helix 69
AH6
B
601 613Right-handed alpha
Helix 70
AH7
B
637 654Right-handed alpha
Helix 71
AH8
B
668 677Right-handed alpha
Helix 72
AH9
B
679 690Right-handed alpha
Helix 73
AI1
B
691 693Right-handed 310
Helix 74
AI2
B
698 701Right-handed 310
Helix 75
AI3
B
702 714Right-handed alpha
Helix 76
AI4
B
723 740Right-handed alpha
Helix 77
AI5
B
765 770Right-handed alpha
Helix 78
AI6
B
785 793Right-handed alpha
Helix 79
AI7
B
808 812Right-handed 310
Helix 80
AI8
B
822 834Right-handed alpha
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There are 10 sheets in PDB entry 9HGJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 58first strand
Strand 2
A
232 237parallel
Strand 3
A
76 80parallel
Strand 4
A
207 212parallel
Strand 5
A
170 174parallel
Strand 6
A
106 110parallel
Strand 7
A
150 153parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 251first strand
Strand 2
A
395 400parallel
Strand 3
A
364 369parallel
Strand 4
A
300 304parallel
Strand 5
A
344 347parallel
Strand 6
A
324 327parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 620first strand
Strand 2
A
626 631anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 657first strand
Strand 2
A
662 663anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
743 746first strand
Strand 2
A
801 804anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 58first strand
Strand 2
B
233 237parallel
Strand 3
B
76 79parallel
Strand 4
B
207 210parallel
Strand 5
B
170 173parallel
Strand 6
B
106 110parallel
Strand 7
B
150 153parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 304first strand
Strand 2
B
364 369parallel
Strand 3
B
395 400parallel
Strand 4
B
248 251parallel
Strand 5
B
495 498parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
324 327first strand
Strand 2
B
344 347parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
615 621first strand
Strand 2
B
625 631anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
743 746first strand
Strand 2
B
801 804anti-parallel
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