Analysis of interatomic Contacts of Structural Units in PDB entry:
9HGO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HGO entry

There are 2 chains in PDB entry 9HGO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -12LYS 285
B
 SER 0LYS 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 9HGO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 14Right-handed alpha
Helix 2
AA2
A
24 35Right-handed alpha
Helix 3
AA3
A
42 50Right-handed alpha
Helix 4
AA4
A
59 74Right-handed alpha
Helix 5
AA5
A
88 102Right-handed alpha
Helix 6
AA6
A
128 143Right-handed alpha
Helix 7
AA7
A
154 175Right-handed alpha
Helix 8
AA8
A
186 188Right-handed 310
Helix 9
AA9
A
189 198Right-handed alpha
Helix 10
AB1
A
215 222Right-handed alpha
Helix 11
AB2
A
231 252Right-handed alpha
Helix 12
AB3
A
254 261Right-handed 310
Helix 13
AB4
A
263 271Right-handed alpha
Helix 14
AB5
A
273 284Right-handed alpha
Helix 15
AB6
B
2 14Right-handed alpha
Helix 16
AB7
B
24 35Right-handed alpha
Helix 17
AB8
B
42 50Right-handed alpha
Helix 18
AB9
B
59 74Right-handed alpha
Helix 19
AC1
B
88 102Right-handed alpha
Helix 20
AC2
B
128 143Right-handed alpha
Helix 21
AC3
B
155 175Right-handed alpha
Helix 22
AC4
B
186 188Right-handed 310
Helix 23
AC5
B
189 198Right-handed alpha
Helix 24
AC6
B
215 222Right-handed alpha
Helix 25
AC7
B
231 252Right-handed alpha
Helix 26
AC8
B
254 261Right-handed 310
Helix 27
AC9
B
263 271Right-handed alpha
Helix 28
AD1
B
272 284Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9HGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-11 -9first strand
Strand 2
A
-6 -4anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
38 41parallel
Strand 3
A
78 81parallel
Strand 4
A
106 110parallel
Strand 5
A
148 153parallel
Strand 6
A
178 181parallel
Strand 7
A
201 204parallel
Strand 8
A
226 229parallel
Strand 9
A
17 21parallel
Back to list of sheets
Back to top of page

There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 21first strand
Strand 2
B
38 41parallel
Strand 3
B
78 81parallel
Strand 4
B
106 110parallel
Strand 5
B
148 153parallel
Strand 6
B
178 181parallel
Strand 7
B
201 204parallel
Strand 8
B
226 229parallel
Strand 9
B
17 21parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il