Analysis of interatomic Contacts of Structural Units in PDB entry:
9HH1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HH1 entry

There are 2 chains in PDB entry 9HH1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 95PHE 300
B
 GLY 95PHE 300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9HH1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
102 109Right-handed alpha
Helix 2
AA2
A
109 121Right-handed alpha
Helix 3
AA3
A
171 179Right-handed alpha
Helix 4
AA4
A
184 190Right-handed 310
Helix 5
AA5
A
207 212Right-handed alpha
Helix 6
AA6
A
228 238Right-handed alpha
Helix 7
AA7
A
247 251Right-handed alpha
Helix 8
AA8
A
277 279Right-handed 310
Helix 9
AA9
A
281 297Right-handed alpha
Helix 10
AB1
B
102 109Right-handed alpha
Helix 11
AB2
B
109 121Right-handed alpha
Helix 12
AB3
B
171 179Right-handed alpha
Helix 13
AB4
B
184 190Right-handed 310
Helix 14
AB5
B
207 212Right-handed alpha
Helix 15
AB6
B
228 238Right-handed alpha
Helix 16
AB7
B
247 251Right-handed alpha
Helix 17
AB8
B
277 279Right-handed 310
Helix 18
AB9
B
281 297Right-handed alpha
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There are 2 sheets in PDB entry 9HH1. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 164first strand
Strand 2
A
268 275anti-parallel
Strand 3
A
144 147anti-parallel
Strand 4
A
96 101parallel
Strand 5
A
125 130parallel
Strand 6
B
224 226parallel
Strand 7
B
192 194parallel
Strand 8
B
242 246parallel
Strand 9
B
166 170anti-parallel
Strand 10
B
257 259anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 259first strand
Strand 2
A
166 170anti-parallel
Strand 3
A
242 246anti-parallel
Strand 4
A
192 194parallel
Strand 5
A
224 226parallel
Strand 6
B
125 130parallel
Strand 7
B
96 101parallel
Strand 8
B
144 147parallel
Strand 9
B
268 275anti-parallel
Strand 10
B
156 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il