Analysis of interatomic Contacts of Structural Units in PDB entry:
9HH2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HH2 entry

There are 4 chains in PDB entry 9HH2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 45PHE 95
A
 GLY 97HIS 510
B
 GLU 45PHE 95
B
 GLY 97TYR 509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9HH2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
63 67Right-handed 310
Helix 2
AA2
A
73 82Right-handed alpha
Helix 3
AA3
A
95 106Right-handed alpha
Helix 4
AA4
A
108 113Right-handed alpha
Helix 5
AA5
A
125 129Right-handed 310
Helix 6
AA6
A
138 146Right-handed alpha
Helix 7
AA7
A
161 169Right-handed 310
Helix 8
AA8
A
185 199Right-handed alpha
Helix 9
AA9
A
205 209Right-handed 310
Helix 10
AB1
A
223 243Right-handed alpha
Helix 11
AB2
A
262 267Right-handed alpha
Helix 12
AB3
A
268 270Right-handed 310
Helix 13
AB4
A
274 301Right-handed alpha
Helix 14
AB5
A
336 340Right-handed alpha
Helix 15
AB6
A
366 375Right-handed alpha
Helix 16
AB7
A
390 397Right-handed alpha
Helix 17
AB8
A
454 470Right-handed alpha
Helix 18
AB9
A
480 489Right-handed alpha
Helix 19
AC1
A
494 499Right-handed alpha
Helix 20
AC2
A
501 505Right-handed 310
Helix 21
AC3
B
63 67Right-handed 310
Helix 22
AC4
B
73 82Right-handed alpha
Helix 23
AC5
B
95 106Right-handed alpha
Helix 24
AC6
B
108 113Right-handed alpha
Helix 25
AC7
B
125 129Right-handed 310
Helix 26
AC8
B
138 146Right-handed alpha
Helix 27
AC9
B
161 169Right-handed 310
Helix 28
AD1
B
185 199Right-handed alpha
Helix 29
AD2
B
205 209Right-handed 310
Helix 30
AD3
B
223 243Right-handed alpha
Helix 31
AD4
B
262 267Right-handed alpha
Helix 32
AD5
B
268 270Right-handed 310
Helix 33
AD6
B
274 301Right-handed alpha
Helix 34
AD7
B
336 340Right-handed alpha
Helix 35
AD8
B
366 375Right-handed alpha
Helix 36
AD9
B
390 397Right-handed alpha
Helix 37
AE1
B
454 470Right-handed alpha
Helix 38
AE2
B
480 489Right-handed alpha
Helix 39
AE3
B
494 499Right-handed alpha
Helix 40
AE4
B
501 506Right-handed alpha
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There are 6 sheets in PDB entry 9HH2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
216 217first strand
Strand 2
A
212 213anti-parallel
Strand 3
A
173 177anti-parallel
Strand 4
A
149 155parallel
Strand 5
A
246 251parallel
Strand 6
A
49 55parallel
Strand 7
A
307 313parallel
Strand 8
A
344 347anti-parallel
Strand 9
A
84 86anti-parallel
Strand 10
A
356 358parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
89 90anti-parallel
Strand 3
A
362 363parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 411first strand
Strand 2
A
416 422anti-parallel
Strand 3
A
425 429anti-parallel
Strand 4
A
436 439anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 217first strand
Strand 2
B
212 213anti-parallel
Strand 3
B
173 177anti-parallel
Strand 4
B
149 155parallel
Strand 5
B
246 251parallel
Strand 6
B
49 55parallel
Strand 7
B
307 313parallel
Strand 8
B
344 347anti-parallel
Strand 9
B
84 86anti-parallel
Strand 10
B
356 358parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 342first strand
Strand 2
B
89 90anti-parallel
Strand 3
B
362 363parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
406 411first strand
Strand 2
B
416 422anti-parallel
Strand 3
B
425 429anti-parallel
Strand 4
B
436 439anti-parallel
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