Analysis of interatomic Contacts of Structural Units in PDB entry:
9HH3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HH3 entry

There are 4 chains in PDB entry 9HH3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 46	TYR 509
B	THR 46	TYR 509
C	THR 46	TYR 509
D	THR 46	TYR 509

There are 75 helices in PDB entry 9HH3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	67	Right-handed 310
Helix 2	AA2	A	73	82	Right-handed alpha
Helix 3	AA3	A	95	106	Right-handed alpha
Helix 4	AA4	A	108	113	Right-handed alpha
Helix 5	AA5	A	125	129	Right-handed 310
Helix 6	AA6	A	138	145	Right-handed alpha
Helix 7	AA7	A	161	169	Right-handed 310
Helix 8	AA8	A	185	199	Right-handed alpha
Helix 9	AA9	A	205	209	Right-handed 310
Helix 10	AB1	A	223	242	Right-handed alpha
Helix 11	AB2	A	262	268	Right-handed alpha
Helix 12	AB3	A	274	301	Right-handed alpha
Helix 13	AB4	A	336	340	Right-handed alpha
Helix 14	AB5	A	366	376	Right-handed alpha
Helix 15	AB6	A	390	397	Right-handed alpha
Helix 16	AB7	A	454	470	Right-handed alpha
Helix 17	AB8	A	480	489	Right-handed alpha
Helix 18	AB9	A	494	499	Right-handed alpha
Helix 19	AC1	A	501	506	Right-handed alpha
Helix 20	AC2	B	63	67	Right-handed 310
Helix 21	AC3	B	73	82	Right-handed alpha
Helix 22	AC4	B	95	106	Right-handed alpha
Helix 23	AC5	B	108	113	Right-handed alpha
Helix 24	AC6	B	138	146	Right-handed alpha
Helix 25	AC7	B	161	169	Right-handed 310
Helix 26	AC8	B	185	199	Right-handed alpha
Helix 27	AC9	B	205	209	Right-handed 310
Helix 28	AD1	B	223	242	Right-handed alpha
Helix 29	AD2	B	262	267	Right-handed alpha
Helix 30	AD3	B	268	270	Right-handed 310
Helix 31	AD4	B	274	301	Right-handed alpha
Helix 32	AD5	B	336	340	Right-handed alpha
Helix 33	AD6	B	366	375	Right-handed alpha
Helix 34	AD7	B	390	397	Right-handed alpha
Helix 35	AD8	B	454	470	Right-handed alpha
Helix 36	AD9	B	480	489	Right-handed alpha
Helix 37	AE1	B	494	499	Right-handed alpha
Helix 38	AE2	B	501	505	Right-handed 310
Helix 39	AE3	C	63	67	Right-handed 310
Helix 40	AE4	C	73	82	Right-handed alpha
Helix 41	AE5	C	95	106	Right-handed alpha
Helix 42	AE6	C	108	113	Right-handed alpha
Helix 43	AE7	C	138	145	Right-handed alpha
Helix 44	AE8	C	161	169	Right-handed 310
Helix 45	AE9	C	185	199	Right-handed alpha
Helix 46	AF1	C	205	209	Right-handed 310
Helix 47	AF2	C	223	243	Right-handed alpha
Helix 48	AF3	C	262	267	Right-handed alpha
Helix 49	AF4	C	268	270	Right-handed 310
Helix 50	AF5	C	274	301	Right-handed alpha
Helix 51	AF6	C	336	340	Right-handed alpha
Helix 52	AF7	C	366	375	Right-handed alpha
Helix 53	AF8	C	390	397	Right-handed alpha
Helix 54	AF9	C	454	470	Right-handed alpha
Helix 55	AG1	C	480	489	Right-handed alpha
Helix 56	AG2	C	494	499	Right-handed alpha
Helix 57	AG3	C	501	505	Right-handed 310
Helix 58	AG4	D	63	67	Right-handed 310
Helix 59	AG5	D	73	82	Right-handed alpha
Helix 60	AG6	D	95	106	Right-handed alpha
Helix 61	AG7	D	108	113	Right-handed alpha
Helix 62	AG8	D	138	146	Right-handed alpha
Helix 63	AG9	D	161	169	Right-handed 310
Helix 64	AH1	D	185	199	Right-handed alpha
Helix 65	AH2	D	205	209	Right-handed 310
Helix 66	AH3	D	223	243	Right-handed alpha
Helix 67	AH4	D	262	268	Right-handed alpha
Helix 68	AH5	D	274	301	Right-handed alpha
Helix 69	AH6	D	336	340	Right-handed alpha
Helix 70	AH7	D	366	376	Right-handed alpha
Helix 71	AH8	D	390	397	Right-handed alpha
Helix 72	AH9	D	454	470	Right-handed alpha
Helix 73	AI1	D	480	490	Right-handed alpha
Helix 74	AI2	D	494	499	Right-handed alpha
Helix 75	AI3	D	501	506	Right-handed alpha

There are 12 sheets in PDB entry 9HH3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	212	213	anti-parallel
Strand 3	A	173	177	anti-parallel
Strand 4	A	149	155	parallel
Strand 5	A	246	251	parallel
Strand 6	A	49	55	parallel
Strand 7	A	307	313	parallel
Strand 8	A	341	347	anti-parallel
Strand 9	A	84	90	anti-parallel
Strand 10	A	356	358	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	212	213	anti-parallel
Strand 3	A	173	177	anti-parallel
Strand 4	A	149	155	parallel
Strand 5	A	246	251	parallel
Strand 6	A	49	55	parallel
Strand 7	A	307	313	parallel
Strand 8	A	341	347	anti-parallel
Strand 9	A	84	90	anti-parallel
Strand 10	A	362	363	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	411	first strand
Strand 2	A	416	422	anti-parallel
Strand 3	A	425	429	anti-parallel
Strand 4	A	436	439	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	212	213	anti-parallel
Strand 3	B	173	177	anti-parallel
Strand 4	B	149	155	parallel
Strand 5	B	246	251	parallel
Strand 6	B	49	55	parallel
Strand 7	B	307	313	parallel
Strand 8	B	344	347	anti-parallel
Strand 9	B	84	86	anti-parallel
Strand 10	B	356	358	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	342	first strand
Strand 2	B	89	90	anti-parallel
Strand 3	B	362	363	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	411	first strand
Strand 2	B	416	422	anti-parallel
Strand 3	B	425	429	anti-parallel
Strand 4	B	436	439	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	212	213	anti-parallel
Strand 3	C	173	177	anti-parallel
Strand 4	C	149	155	parallel
Strand 5	C	246	251	parallel
Strand 6	C	49	55	parallel
Strand 7	C	307	313	parallel
Strand 8	C	344	347	anti-parallel
Strand 9	C	84	86	anti-parallel
Strand 10	C	356	358	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	342	first strand
Strand 2	C	89	90	anti-parallel
Strand 3	C	362	363	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	406	411	first strand
Strand 2	C	416	422	anti-parallel
Strand 3	C	425	429	anti-parallel
Strand 4	C	436	439	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	213	first strand
Strand 2	D	173	177	anti-parallel
Strand 3	D	149	155	parallel
Strand 4	D	246	251	parallel
Strand 5	D	49	55	parallel
Strand 6	D	307	313	parallel
Strand 7	D	344	347	anti-parallel
Strand 8	D	84	86	anti-parallel
Strand 9	D	356	358	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	342	first strand
Strand 2	D	89	90	anti-parallel
Strand 3	D	362	363	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	411	first strand
Strand 2	D	416	422	anti-parallel
Strand 3	D	425	429	anti-parallel
Strand 4	D	436	439	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HH3

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HH3