Analysis of interatomic Contacts of Structural Units in PDB entry:
9HH4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HH4 entry

There are 8 chains in PDB entry 9HH4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 45	PHE 95
A	GLY 97	TYR 509
B	GLU 45	PHE 95
B	GLY 97	HIS 510
C	THR 46	PHE 95
C	GLY 97	TYR 509
D	GLU 45	PHE 95
D	GLY 97	HIS 510

There are 78 helices in PDB entry 9HH4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	63	67	Right-handed 310
Helix 2	AA2	A	73	82	Right-handed alpha
Helix 3	AA3	A	95	106	Right-handed alpha
Helix 4	AA4	A	108	112	Right-handed 310
Helix 5	AA5	A	125	129	Right-handed 310
Helix 6	AA6	A	138	146	Right-handed alpha
Helix 7	AA7	A	161	169	Right-handed 310
Helix 8	AA8	A	185	199	Right-handed alpha
Helix 9	AA9	A	205	209	Right-handed 310
Helix 10	AB1	A	223	243	Right-handed alpha
Helix 11	AB2	A	262	267	Right-handed alpha
Helix 12	AB3	A	268	270	Right-handed 310
Helix 13	AB4	A	274	301	Right-handed alpha
Helix 14	AB5	A	336	340	Right-handed alpha
Helix 15	AB6	A	366	375	Right-handed alpha
Helix 16	AB7	A	390	397	Right-handed alpha
Helix 17	AB8	A	454	471	Right-handed alpha
Helix 18	AB9	A	480	489	Right-handed alpha
Helix 19	AC1	A	494	499	Right-handed alpha
Helix 20	AC2	A	501	506	Right-handed alpha
Helix 21	AC3	B	63	67	Right-handed 310
Helix 22	AC4	B	73	82	Right-handed alpha
Helix 23	AC5	B	95	106	Right-handed alpha
Helix 24	AC6	B	108	113	Right-handed alpha
Helix 25	AC7	B	125	129	Right-handed 310
Helix 26	AC8	B	138	146	Right-handed alpha
Helix 27	AC9	B	161	169	Right-handed 310
Helix 28	AD1	B	185	199	Right-handed alpha
Helix 29	AD2	B	205	209	Right-handed 310
Helix 30	AD3	B	223	243	Right-handed alpha
Helix 31	AD4	B	262	268	Right-handed alpha
Helix 32	AD5	B	274	301	Right-handed alpha
Helix 33	AD6	B	336	340	Right-handed alpha
Helix 34	AD7	B	366	375	Right-handed alpha
Helix 35	AD8	B	390	397	Right-handed alpha
Helix 36	AD9	B	454	470	Right-handed alpha
Helix 37	AE1	B	480	489	Right-handed alpha
Helix 38	AE2	B	494	499	Right-handed alpha
Helix 39	AE3	B	501	506	Right-handed alpha
Helix 40	AE4	C	63	67	Right-handed 310
Helix 41	AE5	C	73	82	Right-handed alpha
Helix 42	AE6	C	95	106	Right-handed alpha
Helix 43	AE7	C	108	113	Right-handed alpha
Helix 44	AE8	C	125	129	Right-handed 310
Helix 45	AE9	C	138	146	Right-handed alpha
Helix 46	AF1	C	161	169	Right-handed 310
Helix 47	AF2	C	185	200	Right-handed alpha
Helix 48	AF3	C	205	209	Right-handed 310
Helix 49	AF4	C	223	243	Right-handed alpha
Helix 50	AF5	C	262	268	Right-handed alpha
Helix 51	AF6	C	274	301	Right-handed alpha
Helix 52	AF7	C	336	340	Right-handed alpha
Helix 53	AF8	C	366	375	Right-handed alpha
Helix 54	AF9	C	390	397	Right-handed alpha
Helix 55	AG1	C	454	470	Right-handed alpha
Helix 56	AG2	C	480	489	Right-handed alpha
Helix 57	AG3	C	494	499	Right-handed alpha
Helix 58	AG4	C	501	506	Right-handed alpha
Helix 59	AG5	D	63	67	Right-handed 310
Helix 60	AG6	D	73	82	Right-handed alpha
Helix 61	AG7	D	95	106	Right-handed alpha
Helix 62	AG8	D	108	113	Right-handed alpha
Helix 63	AG9	D	125	129	Right-handed 310
Helix 64	AH1	D	138	146	Right-handed alpha
Helix 65	AH2	D	161	169	Right-handed 310
Helix 66	AH3	D	185	199	Right-handed alpha
Helix 67	AH4	D	205	209	Right-handed 310
Helix 68	AH5	D	223	243	Right-handed alpha
Helix 69	AH6	D	262	267	Right-handed alpha
Helix 70	AH7	D	268	270	Right-handed 310
Helix 71	AH8	D	274	301	Right-handed alpha
Helix 72	AH9	D	336	340	Right-handed alpha
Helix 73	AI1	D	366	375	Right-handed alpha
Helix 74	AI2	D	390	397	Right-handed alpha
Helix 75	AI3	D	454	470	Right-handed alpha
Helix 76	AI4	D	480	489	Right-handed alpha
Helix 77	AI5	D	494	499	Right-handed alpha
Helix 78	AI6	D	501	506	Right-handed alpha

There are 12 sheets in PDB entry 9HH4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	212	213	anti-parallel
Strand 3	A	173	177	anti-parallel
Strand 4	A	149	155	parallel
Strand 5	A	246	251	parallel
Strand 6	A	49	55	parallel
Strand 7	A	307	313	parallel
Strand 8	A	344	347	anti-parallel
Strand 9	A	84	86	anti-parallel
Strand 10	A	356	358	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	89	90	anti-parallel
Strand 3	A	362	363	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	406	411	first strand
Strand 2	A	416	422	anti-parallel
Strand 3	A	425	429	anti-parallel
Strand 4	A	436	439	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	212	213	anti-parallel
Strand 3	B	173	177	anti-parallel
Strand 4	B	149	155	parallel
Strand 5	B	246	251	parallel
Strand 6	B	49	55	parallel
Strand 7	B	307	313	parallel
Strand 8	B	344	347	anti-parallel
Strand 9	B	84	86	anti-parallel
Strand 10	B	356	358	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	342	first strand
Strand 2	B	89	90	anti-parallel
Strand 3	B	362	363	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	406	411	first strand
Strand 2	B	416	422	anti-parallel
Strand 3	B	425	429	anti-parallel
Strand 4	B	436	439	anti-parallel

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There are 10 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	212	213	anti-parallel
Strand 3	C	173	177	anti-parallel
Strand 4	C	149	155	parallel
Strand 5	C	246	251	parallel
Strand 6	C	49	55	parallel
Strand 7	C	307	313	parallel
Strand 8	C	341	347	anti-parallel
Strand 9	C	84	90	anti-parallel
Strand 10	C	356	358	parallel

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There are 10 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	212	213	anti-parallel
Strand 3	C	173	177	anti-parallel
Strand 4	C	149	155	parallel
Strand 5	C	246	251	parallel
Strand 6	C	49	55	parallel
Strand 7	C	307	313	parallel
Strand 8	C	341	347	anti-parallel
Strand 9	C	84	90	anti-parallel
Strand 10	C	362	363	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	406	411	first strand
Strand 2	C	416	422	anti-parallel
Strand 3	C	425	429	anti-parallel
Strand 4	C	436	439	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	217	first strand
Strand 2	D	212	213	anti-parallel
Strand 3	D	173	177	anti-parallel
Strand 4	D	149	155	parallel
Strand 5	D	246	251	parallel
Strand 6	D	49	55	parallel
Strand 7	D	307	313	parallel
Strand 8	D	344	347	anti-parallel
Strand 9	D	84	86	anti-parallel
Strand 10	D	356	358	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	342	first strand
Strand 2	D	89	90	anti-parallel
Strand 3	D	362	363	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	411	first strand
Strand 2	D	416	422	anti-parallel
Strand 3	D	425	429	anti-parallel
Strand 4	D	436	439	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HH4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HH4