Analysis of interatomic Contacts of Structural Units in PDB entry:
9HH9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HH9 entry

There are 9 chains in PDB entry 9HH9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 1	GLY 426
B	LYS 1	GLY 426
C	LYS 1	GLY 426
D	ASP 1	ILE 106
E	ASP 1	SER 121
F	ASP 1	ILE 106
G	ASP 1	SER 121
H	ASP 1	ILE 106
I	ASP 1	SER 121

There are 36 helices in PDB entry 9HH9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	52	Right-handed 310
Helix 2	AA2	A	88	102	Right-handed alpha
Helix 3	AA3	A	148	150	Right-handed 310
Helix 4	AA4	A	194	198	Right-handed 310
Helix 5	AA5	A	241	248	Right-handed alpha
Helix 6	AA6	A	268	272	Right-handed 310
Helix 7	AA7	A	273	294	Right-handed alpha
Helix 8	AA8	A	298	304	Right-handed alpha
Helix 9	AA9	A	370	372	Right-handed 310
Helix 10	AB1	A	382	387	Right-handed alpha
Helix 11	AB2	A	393	397	Right-handed 310
Helix 12	AB3	A	408	414	Right-handed alpha
Helix 13	AB4	B	48	51	Right-handed 310
Helix 14	AB5	B	88	102	Right-handed alpha
Helix 15	AB6	B	148	150	Right-handed 310
Helix 16	AB7	B	194	198	Right-handed 310
Helix 17	AB8	B	241	249	Right-handed alpha
Helix 18	AB9	B	268	272	Right-handed 310
Helix 19	AC1	B	273	294	Right-handed alpha
Helix 20	AC2	B	298	303	Right-handed alpha
Helix 21	AC3	B	370	372	Right-handed 310
Helix 22	AC4	B	382	387	Right-handed alpha
Helix 23	AC5	B	409	417	Right-handed alpha
Helix 24	AC6	C	47	51	Right-handed 310
Helix 25	AC7	C	88	98	Right-handed alpha
Helix 26	AC8	C	148	152	Right-handed 310
Helix 27	AC9	C	214	218	Right-handed 310
Helix 28	AD1	C	241	246	Right-handed alpha
Helix 29	AD2	C	268	272	Right-handed 310
Helix 30	AD3	C	273	293	Right-handed alpha
Helix 31	AD4	C	298	303	Right-handed alpha
Helix 32	AD5	C	304	306	Right-handed 310
Helix 33	AD6	C	370	372	Right-handed 310
Helix 34	AD7	C	383	386	Right-handed 310
Helix 35	AD8	C	409	414	Right-handed alpha
Helix 36	AD9	C	415	417	Right-handed 310

There are 41 sheets in PDB entry 9HH9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	7	first strand
Strand 2	A	322	335	anti-parallel
Strand 3	A	311	319	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	322	335	anti-parallel
Strand 3	A	344	347	anti-parallel
Strand 4	A	354	355	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	B	390	391	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	214	first strand
Strand 2	A	204	207	anti-parallel
Strand 3	A	182	190	anti-parallel
Strand 4	A	37	45	anti-parallel
Strand 5	A	236	239	anti-parallel
Strand 6	A	227	230	anti-parallel
Strand 7	A	219	222	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	56	65	anti-parallel
Strand 3	A	123	131	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	56	65	anti-parallel
Strand 3	A	166	169	anti-parallel
Strand 4	A	157	159	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	136	first strand
Strand 2	A	143	144	anti-parallel
Strand 3	A	152	153	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	297	first strand
Strand 2	A	400	401	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	A	379	381	anti-parallel
Strand 3	A	374	376	anti-parallel
Strand 4	A	366	368	anti-parallel
Strand 5	A	361	363	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	390	391	first strand
Strand 2	C	23	24	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	7	first strand
Strand 2	B	322	335	anti-parallel
Strand 3	B	311	319	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	16	first strand
Strand 2	B	322	335	anti-parallel
Strand 3	B	346	347	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	C	390	391	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	214	first strand
Strand 2	B	204	206	anti-parallel
Strand 3	B	182	190	anti-parallel
Strand 4	B	37	45	anti-parallel
Strand 5	B	236	239	anti-parallel
Strand 6	B	227	230	anti-parallel
Strand 7	B	219	222	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	134	136	anti-parallel
Strand 3	B	143	144	anti-parallel
Strand 4	B	152	153	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	122	first strand
Strand 2	B	56	69	anti-parallel
Strand 3	B	166	169	anti-parallel
Strand 4	B	157	159	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	131	first strand
Strand 2	B	56	69	anti-parallel
Strand 3	B	77	84	anti-parallel
Strand 4	B	424	425	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	340	first strand
Strand 2	B	380	381	anti-parallel
Strand 3	B	374	375	anti-parallel
Strand 4	B	366	368	anti-parallel
Strand 5	B	361	363	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	7	first strand
Strand 2	C	322	335	anti-parallel
Strand 3	C	311	319	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	322	335	anti-parallel
Strand 3	C	346	347	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	45	first strand
Strand 2	C	182	190	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	130	first strand
Strand 2	C	56	64	anti-parallel
Strand 3	C	166	169	anti-parallel
Strand 4	C	157	159	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	130	first strand
Strand 2	C	56	64	anti-parallel
Strand 3	C	80	84	anti-parallel
Strand 4	C	423	425	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	67	first strand
Strand 2	C	121	122	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	136	first strand
Strand 2	C	143	144	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	227	230	anti-parallel
Strand 3	C	236	237	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	C	379	381	anti-parallel
Strand 3	C	374	376	anti-parallel
Strand 4	C	366	368	anti-parallel
Strand 5	C	361	363	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	46	first strand
Strand 2	D	36	38	anti-parallel
Strand 3	D	85	87	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	4	first strand
Strand 2	E	24	25	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	16	19	first strand
Strand 2	E	79	86	anti-parallel
Strand 3	E	68	72	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	58	60	first strand
Strand 2	E	46	52	anti-parallel
Strand 3	E	35	40	anti-parallel
Strand 4	E	94	98	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	103	104	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	21	22	first strand
Strand 2	F	72	73	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	48	first strand
Strand 2	F	33	37	anti-parallel
Strand 3	F	86	90	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	5	first strand
Strand 2	G	23	25	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	16	20	first strand
Strand 2	G	79	86	anti-parallel
Strand 3	G	68	72	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	60	first strand
Strand 2	G	46	52	anti-parallel
Strand 3	G	35	40	anti-parallel
Strand 4	G	92	98	anti-parallel
Strand 5	G	117	118	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	19	21	first strand
Strand 2	H	73	75	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	46	48	first strand
Strand 2	H	33	36	anti-parallel
Strand 3	H	88	90	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	56	60	first strand
Strand 2	I	46	53	anti-parallel
Strand 3	I	35	40	anti-parallel
Strand 4	I	92	96	anti-parallel
Strand 5	I	116	118	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	71	72	first strand
Strand 2	I	79	80	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HH9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HH9