Analysis of interatomic Contacts of Structural Units in PDB entry:
9HHX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HHX entry

There is 1 chain in PDB entry 9HHX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 30SER 622
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9HHX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 47Right-handed alpha
Helix 2
AA2
A
56 60Right-handed 310
Helix 3
AA3
A
63 68Right-handed 310
Helix 4
AA4
A
88 92Right-handed alpha
Helix 5
AA5
A
111 117Right-handed 310
Helix 6
AA6
A
135 141Right-handed 310
Helix 7
AA7
A
159 165Right-handed 310
Helix 8
AA8
A
183 189Right-handed 310
Helix 9
AA9
A
207 213Right-handed 310
Helix 10
AB1
A
231 237Right-handed 310
Helix 11
AB2
A
255 261Right-handed 310
Helix 12
AB3
A
279 285Right-handed 310
Helix 13
AB4
A
305 309Right-handed 310
Helix 14
AB5
A
327 332Right-handed alpha
Helix 15
AB6
A
373 378Right-handed 310
Helix 16
AB7
A
394 400Right-handed alpha
Helix 17
AB8
A
402 407Right-handed 310
Helix 18
AB9
A
488 492Right-handed 310
Helix 19
AC1
A
530 534Right-handed 310
Helix 20
AC2
A
554 558Right-handed alpha
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There are 8 sheets in PDB entry 9HHX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
93 100parallel
Strand 3
A
81 87anti-parallel
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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
93 100parallel
Strand 3
A
122 124parallel
Strand 4
A
146 148parallel
Strand 5
A
170 172parallel
Strand 6
A
194 196parallel
Strand 7
A
218 222parallel
Strand 8
A
242 246parallel
Strand 9
A
266 270parallel
Strand 10
A
290 294parallel
Strand 11
A
314 316parallel
Strand 12
A
338 340parallel
Strand 13
A
360 362parallel
Strand 14
A
382 384parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
129 132parallel
Strand 3
A
153 156parallel
Strand 4
A
177 178parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
225 229parallel
Strand 3
A
249 251parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
367 368parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 432first strand
Strand 2
A
438 442anti-parallel
Strand 3
A
422 426parallel
Strand 4
A
605 610anti-parallel
Strand 5
A
512 520anti-parallel
Strand 6
A
566 574anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
449 453first strand
Strand 2
A
459 464anti-parallel
Strand 3
A
501 506anti-parallel
Strand 4
A
579 584anti-parallel
Strand 5
A
538 543anti-parallel
Strand 6
A
546 553anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 478first strand
Strand 2
A
494 497anti-parallel
Strand 3
A
602 603anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il