Analysis of interatomic Contacts of Structural Units in PDB entry:
9HI6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HI6 entry

There are 3 chains in PDB entry 9HI6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
H
 GLN 1LYS 230
L
 ASP 1GLY 215
A
 LYS 6HIS 220
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 9HI6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
28 30Right-handed 310
Helix 2
AA2
H
87 91Right-handed 310
Helix 3
AA3
H
172 174Right-handed 310
Helix 4
AA4
H
203 206Right-handed 310
Helix 5
AA5
H
217 220Right-handed 310
Helix 6
AA6
L
83 87Right-handed 310
Helix 7
AA7
L
124 129Right-handed alpha
Helix 8
AA8
L
186 191Right-handed alpha
Helix 9
AA9
A
12 26Right-handed alpha
Helix 10
AB1
A
37 47Right-handed alpha
Helix 11
AB2
A
47 55Right-handed alpha
Helix 12
AB3
A
65 72Right-handed alpha
Helix 13
AB4
A
72 77Right-handed alpha
Helix 14
AB5
A
78 81Right-handed 310
Helix 15
AB6
A
90 96Right-handed alpha
Helix 16
AB7
A
102 120Right-handed alpha
Helix 17
AB8
A
140 163Right-handed alpha
Helix 18
AB9
A
168 173Right-handed alpha
Helix 19
AC1
A
183 186Right-handed 310
Helix 20
AC2
A
193 214Right-handed alpha
Back to top of page

There are 13 sheets in PDB entry 9HI6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
123 127parallel
Strand 3
H
92 102anti-parallel
Strand 4
H
32 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
123 127parallel
Strand 3
H
92 102anti-parallel
Strand 4
H
116 119anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
136 140first strand
Strand 2
H
151 161anti-parallel
Strand 3
H
192 201anti-parallel
Strand 4
H
179 181anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
136 140first strand
Strand 2
H
151 161anti-parallel
Strand 3
H
192 201anti-parallel
Strand 4
H
185 186anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
167 170first strand
Strand 2
H
210 216anti-parallel
Strand 3
H
221 227anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
74 79anti-parallel
Strand 4
L
66 71anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
30 31first strand
Strand 2
L
34 35anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
57 58first strand
Strand 2
L
49 53anti-parallel
Strand 3
L
37 42anti-parallel
Strand 4
L
88 94anti-parallel
Strand 5
L
101 107anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
117 121first strand
Strand 2
L
132 142anti-parallel
Strand 3
L
176 185anti-parallel
Strand 4
L
162 166anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
156 157first strand
Strand 2
L
148 153anti-parallel
Strand 3
L
194 200anti-parallel
Strand 4
L
208 213anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
32 36parallel
Strand 3
A
84 88parallel
Strand 4
A
123 127parallel
Strand 5
A
166 167parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 175first strand
Strand 2
A
180 181anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il