Analysis of interatomic Contacts of Structural Units in PDB entry:
9HIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HIF entry

There are 4 chains in PDB entry 9HIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 41VAL 118
A
 ASP 120GLN 550
B
 PRO 41VAL 118
B
 ASP 120VAL 189
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9HIF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 63Right-handed 310
Helix 2
AA2
A
79 84Right-handed 310
Helix 3
AA3
A
94 99Right-handed alpha
Helix 4
AA4
A
111 113Right-handed 310
Helix 5
AA5
A
118 133Right-handed alpha
Helix 6
AA6
A
148 162Right-handed alpha
Helix 7
AA7
A
174 184Right-handed alpha
Helix 8
AA8
A
202 214Right-handed alpha
Helix 9
AA9
A
226 235Right-handed alpha
Helix 10
AB1
A
235 244Right-handed alpha
Helix 11
AB2
A
258 272Right-handed alpha
Helix 12
AB3
A
290 295Right-handed 310
Helix 13
AB4
A
316 320Right-handed 310
Helix 14
AB5
A
327 343Right-handed alpha
Helix 15
AB6
A
347 361Right-handed alpha
Helix 16
AB7
A
362 364Right-handed 310
Helix 17
AB8
A
377 382Right-handed 310
Helix 18
AB9
A
387 394Right-handed alpha
Helix 19
AC1
A
398 405Right-handed alpha
Helix 20
AC2
A
407 411Right-handed 310
Helix 21
AC3
A
413 418Right-handed 310
Helix 22
AC4
A
430 442Right-handed alpha
Helix 23
AC5
A
461 470Right-handed alpha
Helix 24
AC6
A
495 506Right-handed alpha
Helix 25
AC7
A
535 549Right-handed alpha
Helix 26
AC8
B
59 63Right-handed 310
Helix 27
AC9
B
79 84Right-handed 310
Helix 28
AD1
B
94 99Right-handed alpha
Helix 29
AD2
B
111 113Right-handed 310
Helix 30
AD3
B
118 133Right-handed alpha
Helix 31
AD4
B
148 162Right-handed alpha
Helix 32
AD5
B
174 184Right-handed alpha
Helix 33
AD6
B
202 214Right-handed alpha
Helix 34
AD7
B
226 235Right-handed alpha
Helix 35
AD8
B
235 244Right-handed alpha
Helix 36
AD9
B
258 272Right-handed alpha
Helix 37
AE1
B
290 295Right-handed 310
Helix 38
AE2
B
316 320Right-handed 310
Helix 39
AE3
B
327 343Right-handed alpha
Helix 40
AE4
B
347 361Right-handed alpha
Helix 41
AE5
B
362 364Right-handed 310
Helix 42
AE6
B
377 382Right-handed 310
Helix 43
AE7
B
387 394Right-handed alpha
Helix 44
AE8
B
398 405Right-handed alpha
Helix 45
AE9
B
407 411Right-handed 310
Helix 46
AF1
B
413 418Right-handed 310
Helix 47
AF2
B
430 442Right-handed alpha
Helix 48
AF3
B
461 470Right-handed alpha
Helix 49
AF4
B
495 506Right-handed alpha
Helix 50
AF5
B
535 549Right-handed alpha
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There are 8 sheets in PDB entry 9HIF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
B
89 92parallel
Strand 3
B
104 109anti-parallel
Strand 4
B
369 374parallel
Strand 5
B
250 254parallel
Strand 6
B
276 282parallel
Strand 7
B
322 326parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
322 326first strand
Strand 2
A
276 282parallel
Strand 3
A
250 254parallel
Strand 4
A
369 374parallel
Strand 5
A
104 109parallel
Strand 6
A
89 92anti-parallel
Strand 7
B
76 77parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 191first strand
Strand 2
A
164 170parallel
Strand 3
A
141 145parallel
Strand 4
A
217 219parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 448first strand
Strand 2
A
457 460anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 490first strand
Strand 2
A
509 512parallel
Strand 3
A
530 534anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 191first strand
Strand 2
B
164 170parallel
Strand 3
B
141 145parallel
Strand 4
B
217 219parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
445 448first strand
Strand 2
B
457 460anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
488 490first strand
Strand 2
B
509 512parallel
Strand 3
B
530 534anti-parallel
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