Analysis of interatomic Contacts of Structural Units in PDB entry:
9HIP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HIP entry

There are 4 chains in PDB entry 9HIP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 454
B	MET 1	LYS 454
C	MET 1	ALA 629
D	MET 1	GLY 550

There are 80 helices in PDB entry 9HIP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	38	Right-handed alpha
Helix 2	AA2	A	86	100	Right-handed alpha
Helix 3	AA3	A	109	118	Right-handed alpha
Helix 4	AA4	A	122	130	Right-handed alpha
Helix 5	AA5	A	137	150	Right-handed alpha
Helix 6	AA6	A	150	175	Right-handed alpha
Helix 7	AA7	A	176	186	Right-handed alpha
Helix 8	AA8	A	187	210	Right-handed alpha
Helix 9	AA9	A	211	216	Right-handed alpha
Helix 10	AB1	A	228	238	Right-handed alpha
Helix 11	AB2	A	279	296	Right-handed alpha
Helix 12	AB3	A	312	317	Right-handed alpha
Helix 13	AB4	A	317	324	Right-handed alpha
Helix 14	AB5	A	336	341	Right-handed alpha
Helix 15	AB6	A	364	376	Right-handed alpha
Helix 16	AB7	A	389	413	Right-handed alpha
Helix 17	AB8	A	415	432	Right-handed alpha
Helix 18	AB9	A	433	435	Right-handed 310
Helix 19	AC1	A	439	449	Right-handed alpha
Helix 20	AC2	B	28	38	Right-handed alpha
Helix 21	AC3	B	86	99	Right-handed alpha
Helix 22	AC4	B	109	118	Right-handed alpha
Helix 23	AC5	B	125	143	Right-handed alpha
Helix 24	AC6	B	151	176	Right-handed alpha
Helix 25	AC7	B	187	207	Right-handed alpha
Helix 26	AC8	B	228	238	Right-handed alpha
Helix 27	AC9	B	279	296	Right-handed alpha
Helix 28	AD1	B	312	317	Right-handed alpha
Helix 29	AD2	B	317	324	Right-handed alpha
Helix 30	AD3	B	336	341	Right-handed alpha
Helix 31	AD4	B	364	376	Right-handed alpha
Helix 32	AD5	B	385	396	Right-handed alpha
Helix 33	AD6	B	396	411	Right-handed alpha
Helix 34	AD7	B	415	431	Right-handed alpha
Helix 35	AD8	B	438	450	Right-handed alpha
Helix 36	AD9	C	17	28	Right-handed alpha
Helix 37	AE1	C	56	66	Right-handed alpha
Helix 38	AE2	C	89	93	Right-handed 310
Helix 39	AE3	C	100	114	Right-handed alpha
Helix 40	AE4	C	180	190	Right-handed alpha
Helix 41	AE5	C	211	215	Right-handed 310
Helix 42	AE6	C	232	236	Right-handed 310
Helix 43	AE7	C	248	259	Right-handed alpha
Helix 44	AE8	C	280	287	Right-handed alpha
Helix 45	AE9	C	317	326	Right-handed alpha
Helix 46	AF1	C	369	373	Right-handed 310
Helix 47	AF2	C	377	396	Right-handed alpha
Helix 48	AF3	C	408	419	Right-handed alpha
Helix 49	AF4	C	429	433	Right-handed 310
Helix 50	AF5	C	443	456	Right-handed alpha
Helix 51	AF6	C	459	481	Right-handed alpha
Helix 52	AF7	C	491	498	Right-handed alpha
Helix 53	AF8	C	508	513	Right-handed alpha
Helix 54	AF9	C	519	525	Right-handed alpha
Helix 55	AG1	C	535	562	Right-handed alpha
Helix 56	AG2	C	562	568	Right-handed alpha
Helix 57	AG3	C	575	579	Right-handed 310
Helix 58	AG4	C	583	594	Right-handed alpha
Helix 59	AG5	C	597	603	Right-handed alpha
Helix 60	AG6	C	608	623	Right-handed alpha
Helix 61	AG7	D	15	29	Right-handed alpha
Helix 62	AG8	D	38	42	Right-handed 310
Helix 63	AG9	D	57	66	Right-handed alpha
Helix 64	AH1	D	69	77	Right-handed alpha
Helix 65	AH2	D	89	93	Right-handed 310
Helix 66	AH3	D	100	114	Right-handed alpha
Helix 67	AH4	D	180	188	Right-handed alpha
Helix 68	AH5	D	208	210	Right-handed 310
Helix 69	AH6	D	232	236	Right-handed 310
Helix 70	AH7	D	248	255	Right-handed alpha
Helix 71	AH8	D	317	326	Right-handed alpha
Helix 72	AH9	D	369	373	Right-handed 310
Helix 73	AI1	D	377	397	Right-handed alpha
Helix 74	AI2	D	408	419	Right-handed alpha
Helix 75	AI3	D	443	456	Right-handed alpha
Helix 76	AI4	D	459	482	Right-handed alpha
Helix 77	AI5	D	491	499	Right-handed alpha
Helix 78	AI6	D	509	514	Right-handed alpha
Helix 79	AI7	D	519	525	Right-handed alpha
Helix 80	AI8	D	535	548	Right-handed alpha

There are 15 sheets in PDB entry 9HIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	52	first strand
Strand 2	A	58	67	anti-parallel
Strand 3	A	78	82	anti-parallel
Strand 4	A	21	25	anti-parallel
Strand 5	A	6	10	anti-parallel
Strand 6	A	103	104	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	259	first strand
Strand 2	A	266	270	anti-parallel
Strand 3	A	218	222	parallel
Strand 4	A	298	304	parallel
Strand 5	A	330	335	parallel
Strand 6	A	352	356	parallel
Strand 7	A	346	349	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	58	67	anti-parallel
Strand 3	B	78	82	anti-parallel
Strand 4	B	21	25	anti-parallel
Strand 5	B	7	10	anti-parallel
Strand 6	B	104	105	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	261	first strand
Strand 2	B	264	270	anti-parallel
Strand 3	B	217	222	parallel
Strand 4	B	298	304	parallel
Strand 5	B	330	335	parallel
Strand 6	B	352	356	parallel
Strand 7	B	345	349	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	32	36	parallel
Strand 3	C	9	12	parallel
Strand 4	C	151	153	parallel
Strand 5	C	365	367	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	94	99	anti-parallel
Strand 3	C	78	84	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	130	first strand
Strand 2	C	135	140	anti-parallel
Strand 3	C	145	146	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	171	first strand
Strand 2	C	162	165	anti-parallel
Strand 3	C	341	348	anti-parallel
Strand 4	C	194	201	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	218	first strand
Strand 2	C	242	246	anti-parallel
Strand 3	C	294	299	anti-parallel
Strand 4	C	306	310	anti-parallel
Strand 5	C	204	206	anti-parallel
Strand 6	C	336	338	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	32	36	parallel
Strand 3	D	9	12	parallel
Strand 4	D	151	153	parallel
Strand 5	D	365	367	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	53	first strand
Strand 2	D	94	99	anti-parallel
Strand 3	D	78	84	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	130	first strand
Strand 2	D	135	140	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	171	first strand
Strand 2	D	162	165	anti-parallel
Strand 3	D	341	347	anti-parallel
Strand 4	D	195	201	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	218	first strand
Strand 2	D	242	246	anti-parallel
Strand 3	D	294	299	anti-parallel
Strand 4	D	306	310	anti-parallel
Strand 5	D	204	206	anti-parallel
Strand 6	D	336	338	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	484	485	first strand
Strand 2	D	507	508	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HIP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HIP