Analysis of interatomic Contacts of Structural Units in PDB entry:
9HIQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HIQ entry

There are 6 chains in PDB entry 9HIQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 454
B	MET 1	LYS 454
C	MET 1	ALA 629
D	MET 1	ALA 629
E	MET 1	LYS 454
F	MET 1	LYS 454

There are117 helices in PDB entry 9HIQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	38	Right-handed alpha
Helix 2	AA2	A	86	100	Right-handed alpha
Helix 3	AA3	A	109	118	Right-handed alpha
Helix 4	AA4	A	122	130	Right-handed alpha
Helix 5	AA5	A	137	150	Right-handed alpha
Helix 6	AA6	A	150	171	Right-handed alpha
Helix 7	AA7	A	190	210	Right-handed alpha
Helix 8	AA8	A	211	216	Right-handed alpha
Helix 9	AA9	A	228	238	Right-handed alpha
Helix 10	AB1	A	279	296	Right-handed alpha
Helix 11	AB2	A	312	317	Right-handed alpha
Helix 12	AB3	A	317	324	Right-handed alpha
Helix 13	AB4	A	336	341	Right-handed alpha
Helix 14	AB5	A	364	376	Right-handed alpha
Helix 15	AB6	A	389	413	Right-handed alpha
Helix 16	AB7	A	415	433	Right-handed alpha
Helix 17	AB8	A	439	449	Right-handed alpha
Helix 18	AB9	B	28	38	Right-handed alpha
Helix 19	AC1	B	86	99	Right-handed alpha
Helix 20	AC2	B	109	118	Right-handed alpha
Helix 21	AC3	B	125	143	Right-handed alpha
Helix 22	AC4	B	151	176	Right-handed alpha
Helix 23	AC5	B	187	207	Right-handed alpha
Helix 24	AC6	B	228	238	Right-handed alpha
Helix 25	AC7	B	279	296	Right-handed alpha
Helix 26	AC8	B	312	317	Right-handed alpha
Helix 27	AC9	B	317	324	Right-handed alpha
Helix 28	AD1	B	336	341	Right-handed alpha
Helix 29	AD2	B	364	376	Right-handed alpha
Helix 30	AD3	B	385	396	Right-handed alpha
Helix 31	AD4	B	396	411	Right-handed alpha
Helix 32	AD5	B	415	431	Right-handed alpha
Helix 33	AD6	B	438	450	Right-handed alpha
Helix 34	AD7	C	17	28	Right-handed alpha
Helix 35	AD8	C	56	66	Right-handed alpha
Helix 36	AD9	C	69	75	Right-handed alpha
Helix 37	AE1	C	100	114	Right-handed alpha
Helix 38	AE2	C	180	190	Right-handed alpha
Helix 39	AE3	C	208	210	Right-handed 310
Helix 40	AE4	C	211	215	Right-handed 310
Helix 41	AE5	C	232	236	Right-handed 310
Helix 42	AE6	C	248	258	Right-handed alpha
Helix 43	AE7	C	279	287	Right-handed alpha
Helix 44	AE8	C	317	327	Right-handed alpha
Helix 45	AE9	C	369	373	Right-handed 310
Helix 46	AF1	C	377	396	Right-handed alpha
Helix 47	AF2	C	408	419	Right-handed alpha
Helix 48	AF3	C	429	433	Right-handed 310
Helix 49	AF4	C	443	455	Right-handed alpha
Helix 50	AF5	C	459	482	Right-handed alpha
Helix 51	AF6	C	491	498	Right-handed alpha
Helix 52	AF7	C	508	513	Right-handed alpha
Helix 53	AF8	C	519	525	Right-handed alpha
Helix 54	AF9	C	535	560	Right-handed alpha
Helix 55	AG1	C	562	568	Right-handed alpha
Helix 56	AG2	C	575	579	Right-handed 310
Helix 57	AG3	C	583	594	Right-handed alpha
Helix 58	AG4	C	597	603	Right-handed alpha
Helix 59	AG5	C	608	623	Right-handed alpha
Helix 60	AG6	D	17	28	Right-handed alpha
Helix 61	AG7	D	56	66	Right-handed alpha
Helix 62	AG8	D	69	74	Right-handed alpha
Helix 63	AG9	D	100	114	Right-handed alpha
Helix 64	AH1	D	180	190	Right-handed alpha
Helix 65	AH2	D	208	210	Right-handed 310
Helix 66	AH3	D	211	215	Right-handed 310
Helix 67	AH4	D	232	236	Right-handed 310
Helix 68	AH5	D	248	258	Right-handed alpha
Helix 69	AH6	D	279	287	Right-handed alpha
Helix 70	AH7	D	317	327	Right-handed alpha
Helix 71	AH8	D	369	373	Right-handed 310
Helix 72	AH9	D	377	396	Right-handed alpha
Helix 73	AI1	D	408	419	Right-handed alpha
Helix 74	AI2	D	429	433	Right-handed 310
Helix 75	AI3	D	443	455	Right-handed alpha
Helix 76	AI4	D	459	482	Right-handed alpha
Helix 77	AI5	D	491	498	Right-handed alpha
Helix 78	AI6	D	508	513	Right-handed alpha
Helix 79	AI7	D	519	525	Right-handed alpha
Helix 80	AI8	D	535	560	Right-handed alpha
Helix 81	AI9	D	562	568	Right-handed alpha
Helix 82	AJ1	D	575	579	Right-handed 310
Helix 83	AJ2	D	583	594	Right-handed alpha
Helix 84	AJ3	D	597	603	Right-handed alpha
Helix 85	AJ4	D	608	623	Right-handed alpha
Helix 86	AJ5	E	28	38	Right-handed alpha
Helix 87	AJ6	E	86	99	Right-handed alpha
Helix 88	AJ7	E	109	118	Right-handed alpha
Helix 89	AJ8	E	125	143	Right-handed alpha
Helix 90	AJ9	E	151	176	Right-handed alpha
Helix 91	AK1	E	187	207	Right-handed alpha
Helix 92	AK2	E	228	238	Right-handed alpha
Helix 93	AK3	E	279	296	Right-handed alpha
Helix 94	AK4	E	312	317	Right-handed alpha
Helix 95	AK5	E	317	324	Right-handed alpha
Helix 96	AK6	E	336	341	Right-handed alpha
Helix 97	AK7	E	364	376	Right-handed alpha
Helix 98	AK8	E	385	396	Right-handed alpha
Helix 99	AK9	E	396	411	Right-handed alpha
Helix 100	AL1	E	415	431	Right-handed alpha
Helix 101	AL2	E	438	450	Right-handed alpha
Helix 102	AL3	F	28	38	Right-handed alpha
Helix 103	AL4	F	86	100	Right-handed alpha
Helix 104	AL5	F	109	118	Right-handed alpha
Helix 105	AL6	F	122	130	Right-handed alpha
Helix 106	AL7	F	137	150	Right-handed alpha
Helix 107	AL8	F	150	173	Right-handed alpha
Helix 108	AL9	F	187	210	Right-handed alpha
Helix 109	AM1	F	228	238	Right-handed alpha
Helix 110	AM2	F	279	296	Right-handed alpha
Helix 111	AM3	F	312	317	Right-handed alpha
Helix 112	AM4	F	317	324	Right-handed alpha
Helix 113	AM5	F	336	341	Right-handed alpha
Helix 114	AM6	F	364	376	Right-handed alpha
Helix 115	AM7	F	389	414	Right-handed alpha
Helix 116	AM8	F	415	433	Right-handed alpha
Helix 117	AM9	F	439	449	Right-handed alpha

There are 20 sheets in PDB entry 9HIQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	52	first strand
Strand 2	A	58	67	anti-parallel
Strand 3	A	78	82	anti-parallel
Strand 4	A	21	25	anti-parallel
Strand 5	A	6	10	anti-parallel
Strand 6	A	103	105	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	259	first strand
Strand 2	A	266	270	anti-parallel
Strand 3	A	218	223	parallel
Strand 4	A	298	304	parallel
Strand 5	A	330	335	parallel
Strand 6	A	352	356	parallel
Strand 7	A	346	349	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	52	first strand
Strand 2	B	58	67	anti-parallel
Strand 3	B	78	82	anti-parallel
Strand 4	B	21	25	anti-parallel
Strand 5	B	7	10	anti-parallel
Strand 6	B	104	105	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	261	first strand
Strand 2	B	264	270	anti-parallel
Strand 3	B	217	222	parallel
Strand 4	B	298	304	parallel
Strand 5	B	330	335	parallel
Strand 6	B	352	356	parallel
Strand 7	B	345	349	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	32	36	parallel
Strand 3	C	9	12	parallel
Strand 4	C	151	153	parallel
Strand 5	C	365	367	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	94	99	anti-parallel
Strand 3	C	78	84	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	130	first strand
Strand 2	C	135	140	anti-parallel
Strand 3	C	145	146	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	171	first strand
Strand 2	C	162	165	anti-parallel
Strand 3	C	341	348	anti-parallel
Strand 4	C	194	201	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	218	first strand
Strand 2	C	242	246	anti-parallel
Strand 3	C	294	299	anti-parallel
Strand 4	C	306	310	anti-parallel
Strand 5	C	204	206	anti-parallel
Strand 6	C	336	338	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	354	first strand
Strand 2	C	358	359	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	32	36	parallel
Strand 3	D	9	12	parallel
Strand 4	D	151	153	parallel
Strand 5	D	365	367	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	94	99	anti-parallel
Strand 3	D	78	84	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	130	first strand
Strand 2	D	135	140	anti-parallel
Strand 3	D	145	146	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	171	first strand
Strand 2	D	162	165	anti-parallel
Strand 3	D	341	348	anti-parallel
Strand 4	D	194	201	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	218	first strand
Strand 2	D	242	246	anti-parallel
Strand 3	D	294	299	anti-parallel
Strand 4	D	306	310	anti-parallel
Strand 5	D	204	206	anti-parallel
Strand 6	D	336	338	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	354	first strand
Strand 2	D	358	359	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	52	first strand
Strand 2	E	58	67	anti-parallel
Strand 3	E	78	82	anti-parallel
Strand 4	E	21	25	anti-parallel
Strand 5	E	7	10	anti-parallel
Strand 6	E	104	105	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	255	261	first strand
Strand 2	E	264	270	anti-parallel
Strand 3	E	217	222	parallel
Strand 4	E	298	304	parallel
Strand 5	E	330	335	parallel
Strand 6	E	352	356	parallel
Strand 7	E	345	349	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	52	first strand
Strand 2	F	58	67	anti-parallel
Strand 3	F	78	82	anti-parallel
Strand 4	F	21	25	anti-parallel
Strand 5	F	6	10	anti-parallel
Strand 6	F	103	105	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	255	259	first strand
Strand 2	F	266	270	anti-parallel
Strand 3	F	218	222	parallel
Strand 4	F	298	304	parallel
Strand 5	F	330	335	parallel
Strand 6	F	352	356	parallel
Strand 7	F	346	349	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HIQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HIQ