Analysis of interatomic Contacts of Structural Units in PDB entry:
9HIR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HIR entry

There are 2 chains in PDB entry 9HIR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	ALA 629
D	MET 1	ALA 629

There are 51 helices in PDB entry 9HIR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	17	28	Right-handed alpha
Helix 2	AA2	C	56	66	Right-handed alpha
Helix 3	AA3	C	100	114	Right-handed alpha
Helix 4	AA4	C	180	190	Right-handed alpha
Helix 5	AA5	C	208	210	Right-handed 310
Helix 6	AA6	C	211	215	Right-handed 310
Helix 7	AA7	C	232	236	Right-handed 310
Helix 8	AA8	C	248	258	Right-handed alpha
Helix 9	AA9	C	279	287	Right-handed alpha
Helix 10	AB1	C	317	327	Right-handed alpha
Helix 11	AB2	C	369	373	Right-handed 310
Helix 12	AB3	C	377	396	Right-handed alpha
Helix 13	AB4	C	408	419	Right-handed alpha
Helix 14	AB5	C	429	433	Right-handed 310
Helix 15	AB6	C	443	455	Right-handed alpha
Helix 16	AB7	C	459	482	Right-handed alpha
Helix 17	AB8	C	491	498	Right-handed alpha
Helix 18	AB9	C	508	513	Right-handed alpha
Helix 19	AC1	C	519	525	Right-handed alpha
Helix 20	AC2	C	535	562	Right-handed alpha
Helix 21	AC3	C	562	568	Right-handed alpha
Helix 22	AC4	C	575	579	Right-handed 310
Helix 23	AC5	C	583	594	Right-handed alpha
Helix 24	AC6	C	597	603	Right-handed alpha
Helix 25	AC7	C	608	623	Right-handed alpha
Helix 26	AC8	D	17	28	Right-handed alpha
Helix 27	AC9	D	56	66	Right-handed alpha
Helix 28	AD1	D	69	74	Right-handed alpha
Helix 29	AD2	D	100	114	Right-handed alpha
Helix 30	AD3	D	180	190	Right-handed alpha
Helix 31	AD4	D	208	210	Right-handed 310
Helix 32	AD5	D	211	215	Right-handed 310
Helix 33	AD6	D	232	236	Right-handed 310
Helix 34	AD7	D	248	258	Right-handed alpha
Helix 35	AD8	D	279	287	Right-handed alpha
Helix 36	AD9	D	317	327	Right-handed alpha
Helix 37	AE1	D	369	373	Right-handed 310
Helix 38	AE2	D	377	396	Right-handed alpha
Helix 39	AE3	D	408	419	Right-handed alpha
Helix 40	AE4	D	429	433	Right-handed 310
Helix 41	AE5	D	443	455	Right-handed alpha
Helix 42	AE6	D	459	482	Right-handed alpha
Helix 43	AE7	D	491	498	Right-handed alpha
Helix 44	AE8	D	508	513	Right-handed alpha
Helix 45	AE9	D	519	525	Right-handed alpha
Helix 46	AF1	D	535	562	Right-handed alpha
Helix 47	AF2	D	562	568	Right-handed alpha
Helix 48	AF3	D	575	579	Right-handed 310
Helix 49	AF4	D	583	594	Right-handed alpha
Helix 50	AF5	D	597	603	Right-handed alpha
Helix 51	AF6	D	608	623	Right-handed alpha

There are 10 sheets in PDB entry 9HIR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	122	first strand
Strand 2	C	32	36	parallel
Strand 3	C	9	12	parallel
Strand 4	C	151	153	parallel
Strand 5	C	365	367	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	52	first strand
Strand 2	C	94	99	anti-parallel
Strand 3	C	78	84	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	130	first strand
Strand 2	C	135	140	anti-parallel
Strand 3	C	145	146	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	171	first strand
Strand 2	C	162	165	anti-parallel
Strand 3	C	341	348	anti-parallel
Strand 4	C	194	201	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	218	first strand
Strand 2	C	242	246	anti-parallel
Strand 3	C	294	299	anti-parallel
Strand 4	C	306	310	anti-parallel
Strand 5	C	204	206	anti-parallel
Strand 6	C	336	338	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	122	first strand
Strand 2	D	32	36	parallel
Strand 3	D	9	12	parallel
Strand 4	D	151	153	parallel
Strand 5	D	365	367	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	52	first strand
Strand 2	D	94	99	anti-parallel
Strand 3	D	78	84	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	130	first strand
Strand 2	D	135	140	anti-parallel
Strand 3	D	145	146	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	168	171	first strand
Strand 2	D	162	165	anti-parallel
Strand 3	D	341	348	anti-parallel
Strand 4	D	194	201	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	218	first strand
Strand 2	D	242	246	anti-parallel
Strand 3	D	294	299	anti-parallel
Strand 4	D	306	310	anti-parallel
Strand 5	D	204	206	anti-parallel
Strand 6	D	336	338	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HIR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HIR