Analysis of interatomic Contacts of Structural Units in PDB entry:
9HIZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HIZ entry

There are 8 chains in PDB entry 9HIZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 236	SER 444
B	GLY 236	SER 444
R	ASP -2	LYS 66
S	ASP -2	LYS 66
C	GLY 236	SER 444
D	GLY 236	SER 444
T	ASP -2	LYS 66
U	ASP -2	LYS 66

There are 28 helices in PDB entry 9HIZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	246	252	Right-handed alpha
Helix 2	AA2	A	309	315	Right-handed alpha
Helix 3	AA3	A	354	360	Right-handed 310
Helix 4	AA4	A	414	420	Right-handed alpha
Helix 5	AA5	A	432	436	Right-handed 310
Helix 6	AA6	B	246	252	Right-handed alpha
Helix 7	AA7	B	309	315	Right-handed alpha
Helix 8	AA8	B	354	360	Right-handed 310
Helix 9	AA9	B	414	420	Right-handed alpha
Helix 10	AB1	B	432	436	Right-handed 310
Helix 11	AB2	R	48	50	Right-handed 310
Helix 12	AB3	R	51	65	Right-handed alpha
Helix 13	AB4	S	48	50	Right-handed 310
Helix 14	AB5	S	51	65	Right-handed alpha
Helix 15	AB6	C	246	252	Right-handed alpha
Helix 16	AB7	C	309	315	Right-handed alpha
Helix 17	AB8	C	354	360	Right-handed 310
Helix 18	AB9	C	414	420	Right-handed alpha
Helix 19	AC1	C	432	436	Right-handed 310
Helix 20	AC2	D	246	252	Right-handed alpha
Helix 21	AC3	D	309	315	Right-handed alpha
Helix 22	AC4	D	354	360	Right-handed 310
Helix 23	AC5	D	414	420	Right-handed alpha
Helix 24	AC6	D	432	436	Right-handed 310
Helix 25	AC7	T	48	50	Right-handed 310
Helix 26	AC8	T	51	65	Right-handed alpha
Helix 27	AC9	U	48	50	Right-handed 310
Helix 28	AD1	U	51	65	Right-handed alpha

There are 28 sheets in PDB entry 9HIZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	239	243	first strand
Strand 2	A	258	266	anti-parallel
Strand 3	A	300	307	anti-parallel
Strand 4	A	288	290	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	A	274	279	anti-parallel
Strand 3	A	319	324	anti-parallel
Strand 4	A	332	336	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	362	372	anti-parallel
Strand 3	A	404	413	anti-parallel
Strand 4	A	391	393	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	362	372	anti-parallel
Strand 3	A	404	413	anti-parallel
Strand 4	A	397	398	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	388	first strand
Strand 2	A	378	383	anti-parallel
Strand 3	A	422	428	anti-parallel
Strand 4	A	437	442	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	243	first strand
Strand 2	B	258	266	anti-parallel
Strand 3	B	300	307	anti-parallel
Strand 4	B	288	290	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	B	273	279	anti-parallel
Strand 3	B	318	325	anti-parallel
Strand 4	B	332	337	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	362	372	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	391	393	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	362	372	anti-parallel
Strand 3	B	404	413	anti-parallel
Strand 4	B	397	398	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	388	first strand
Strand 2	B	378	383	anti-parallel
Strand 3	B	422	428	anti-parallel
Strand 4	B	437	442	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	3	8	first strand
Strand 2	R	11	16	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	20	26	first strand
Strand 2	R	29	36	anti-parallel
Strand 3	R	39	46	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	8	first strand
Strand 2	S	11	16	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	20	26	first strand
Strand 2	S	29	36	anti-parallel
Strand 3	S	39	46	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	239	243	first strand
Strand 2	C	258	266	anti-parallel
Strand 3	C	300	307	anti-parallel
Strand 4	C	288	290	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	284	first strand
Strand 2	C	274	279	anti-parallel
Strand 3	C	318	324	anti-parallel
Strand 4	C	332	337	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	351	first strand
Strand 2	C	362	372	anti-parallel
Strand 3	C	404	413	anti-parallel
Strand 4	C	391	393	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	351	first strand
Strand 2	C	362	372	anti-parallel
Strand 3	C	404	413	anti-parallel
Strand 4	C	397	398	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	386	388	first strand
Strand 2	C	378	383	anti-parallel
Strand 3	C	422	428	anti-parallel
Strand 4	C	437	442	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	239	243	first strand
Strand 2	D	258	266	anti-parallel
Strand 3	D	300	307	anti-parallel
Strand 4	D	288	294	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	284	first strand
Strand 2	D	274	279	anti-parallel
Strand 3	D	319	324	anti-parallel
Strand 4	D	332	336	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	351	first strand
Strand 2	D	362	372	anti-parallel
Strand 3	D	404	413	anti-parallel
Strand 4	D	391	393	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	351	first strand
Strand 2	D	362	372	anti-parallel
Strand 3	D	404	413	anti-parallel
Strand 4	D	397	398	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	386	388	first strand
Strand 2	D	378	383	anti-parallel
Strand 3	D	423	428	anti-parallel
Strand 4	D	437	441	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	3	8	first strand
Strand 2	T	11	16	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	20	26	first strand
Strand 2	T	29	36	anti-parallel
Strand 3	T	39	46	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	3	8	first strand
Strand 2	U	11	16	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	20	26	first strand
Strand 2	U	29	36	anti-parallel
Strand 3	U	39	46	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HIZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HIZ