Analysis of interatomic Contacts of Structural Units in PDB entry:
9HJ1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HJ1 entry

There are 3 chains in PDB entry 9HJ1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 178LEU 432
B
 MET 1PRO 294
C
 ASN 2GLY 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9HJ1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
178 193Right-handed alpha
Helix 2
AA2
A
198 203Right-handed alpha
Helix 3
AA3
A
207 225Right-handed alpha
Helix 4
AA4
A
228 246Right-handed alpha
Helix 5
AA5
A
252 269Right-handed alpha
Helix 6
AA6
A
274 282Right-handed alpha
Helix 7
AA7
A
287 303Right-handed alpha
Helix 8
AA8
A
310 320Right-handed alpha
Helix 9
AA9
A
326 343Right-handed alpha
Helix 10
AB1
A
343 348Right-handed alpha
Helix 11
AB2
A
351 368Right-handed alpha
Helix 12
AB3
A
373 381Right-handed alpha
Helix 13
AB4
A
387 400Right-handed alpha
Helix 14
AB5
A
407 413Right-handed alpha
Helix 15
AB6
A
414 419Right-handed 310
Helix 16
AB7
A
420 424Right-handed 310
Helix 17
AB8
B
45 56Right-handed alpha
Helix 18
AB9
B
87 94Right-handed alpha
Helix 19
AC1
B
100 121Right-handed alpha
Helix 20
AC2
B
129 131Right-handed 310
Helix 21
AC3
B
145 149Right-handed 310
Helix 22
AC4
B
170 175Right-handed alpha
Helix 23
AC5
B
182 199Right-handed alpha
Helix 24
AC6
B
207 220Right-handed alpha
Helix 25
AC7
B
247 252Right-handed alpha
Helix 26
AC8
B
256 267Right-handed alpha
Helix 27
AC9
B
276 282Right-handed alpha
Helix 28
AD1
B
283 287Right-handed 310
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There are 4 sheets in PDB entry 9HJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 11first strand
Strand 2
B
18 23anti-parallel
Strand 3
B
29 36anti-parallel
Strand 4
B
75 81anti-parallel
Strand 5
B
66 71anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
85 86first strand
Strand 2
B
133 136anti-parallel
Strand 3
B
140 143anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 124first strand
Strand 2
B
150 151anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
179 180anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il