Analysis of interatomic Contacts of Structural Units in PDB entry:
9HJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HJ5 entry

There are 2 chains in PDB entry 9HJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 416
B	MET 1	ASP 416

There are 35 helices in PDB entry 9HJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	8	Right-handed 310
Helix 2	AA2	A	17	31	Right-handed alpha
Helix 3	AA3	A	33	35	Right-handed 310
Helix 4	AA4	A	66	77	Right-handed alpha
Helix 5	AA5	A	80	82	Right-handed 310
Helix 6	AA6	A	95	111	Right-handed alpha
Helix 7	AA7	A	120	128	Right-handed alpha
Helix 8	AA8	A	151	167	Right-handed alpha
Helix 9	AA9	A	172	176	Right-handed 310
Helix 10	AB1	A	208	210	Right-handed 310
Helix 11	AB2	A	211	216	Right-handed alpha
Helix 12	AB3	A	235	241	Right-handed alpha
Helix 13	AB4	A	296	300	Right-handed 310
Helix 14	AB5	A	306	321	Right-handed alpha
Helix 15	AB6	A	322	325	Right-handed 310
Helix 16	AB7	A	366	370	Right-handed 310
Helix 17	AB8	A	372	382	Right-handed alpha
Helix 18	AB9	A	386	393	Right-handed alpha
Helix 19	AC1	B	4	8	Right-handed 310
Helix 20	AC2	B	17	31	Right-handed alpha
Helix 21	AC3	B	33	35	Right-handed 310
Helix 22	AC4	B	66	77	Right-handed alpha
Helix 23	AC5	B	80	82	Right-handed 310
Helix 24	AC6	B	95	113	Right-handed alpha
Helix 25	AC7	B	120	126	Right-handed alpha
Helix 26	AC8	B	151	167	Right-handed alpha
Helix 27	AC9	B	172	176	Right-handed 310
Helix 28	AD1	B	208	210	Right-handed 310
Helix 29	AD2	B	211	216	Right-handed alpha
Helix 30	AD3	B	235	241	Right-handed alpha
Helix 31	AD4	B	306	321	Right-handed alpha
Helix 32	AD5	B	322	325	Right-handed 310
Helix 33	AD6	B	366	370	Right-handed 310
Helix 34	AD7	B	372	382	Right-handed alpha
Helix 35	AD8	B	386	393	Right-handed alpha

There are 14 sheets in PDB entry 9HJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	171	first strand
Strand 2	A	37	40	parallel
Strand 3	A	10	13	parallel
Strand 4	A	203	206	parallel
Strand 5	A	356	360	parallel
Strand 6	A	346	349	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	59	first strand
Strand 2	A	148	150	anti-parallel
Strand 3	A	84	86	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	118	first strand
Strand 2	A	140	144	anti-parallel
Strand 3	A	89	93	anti-parallel
Strand 4	A	247	250	parallel
Strand 5	A	253	256	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	184	first strand
Strand 2	A	187	193	anti-parallel
Strand 3	A	198	200	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	264	268	first strand
Strand 2	A	223	233	anti-parallel
Strand 3	A	330	339	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	412	413	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	280	first strand
Strand 2	A	289	292	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	171	first strand
Strand 2	B	37	40	parallel
Strand 3	B	10	13	parallel
Strand 4	B	203	206	parallel
Strand 5	B	356	360	parallel
Strand 6	B	346	349	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	59	first strand
Strand 2	B	148	150	anti-parallel
Strand 3	B	84	86	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	140	144	anti-parallel
Strand 3	B	89	93	anti-parallel
Strand 4	B	247	250	parallel
Strand 5	B	253	255	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	183	first strand
Strand 2	B	188	193	anti-parallel
Strand 3	B	198	200	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	268	first strand
Strand 2	B	223	233	anti-parallel
Strand 3	B	330	339	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	275	first strand
Strand 2	B	412	413	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	280	first strand
Strand 2	B	289	292	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HJ5