Analysis of interatomic Contacts of Structural Units in PDB entry:
9HJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HJI entry

There is 1 chain in PDB entry 9HJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 9HJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 30Right-handed 310
Helix 2
AA2
A
34 53Right-handed alpha
Helix 3
AA3
A
55 71Right-handed alpha
Helix 4
AA4
A
218 222Right-handed 310
Helix 5
AA5
A
479 489Right-handed alpha
Helix 6
AA6
A
505 512Right-handed alpha
Helix 7
AA7
A
513 515Right-handed 310
Helix 8
AA8
A
516 534Right-handed alpha
Helix 9
AA9
A
538 540Right-handed 310
Helix 10
AB1
A
548 561Right-handed alpha
Helix 11
AB2
A
562 565Right-handed 310
Helix 12
AB3
A
585 594Right-handed alpha
Helix 13
AB4
A
598 609Right-handed alpha
Helix 14
AB5
A
636 650Right-handed alpha
Helix 15
AB6
A
672 692Right-handed alpha
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There are 10 sheets in PDB entry 9HJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 17first strand
Strand 2
A
20 23anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
84 89anti-parallel
Strand 3
A
98 102anti-parallel
Strand 4
A
111 112anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 132first strand
Strand 2
A
139 144anti-parallel
Strand 3
A
151 157anti-parallel
Strand 4
A
162 163anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
183 188anti-parallel
Strand 3
A
209 214anti-parallel
Strand 4
A
223 226anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 240first strand
Strand 2
A
246 252anti-parallel
Strand 3
A
259 265anti-parallel
Strand 4
A
281 284anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 297first strand
Strand 2
A
300 305anti-parallel
Strand 3
A
313 317anti-parallel
Strand 4
A
324 328anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 341first strand
Strand 2
A
344 351anti-parallel
Strand 3
A
354 361anti-parallel
Strand 4
A
368 370anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 381first strand
Strand 2
A
388 394anti-parallel
Strand 3
A
401 406anti-parallel
Strand 4
A
415 419anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 438first strand
Strand 2
A
444 452anti-parallel
Strand 3
A
492 496anti-parallel
Strand 4
A
462 465parallel
Strand 5
A
542 545parallel
Strand 6
A
567 568parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 571first strand
Strand 2
A
624 628parallel
Strand 3
A
658 662parallel
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