Analysis of interatomic Contacts of Structural Units in PDB entry:
9HJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HJJ entry

There is 1 chain in PDB entry 9HJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 697
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 9HJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 31Right-handed 310
Helix 2
AA2
A
34 53Right-handed alpha
Helix 3
AA3
A
55 68Right-handed alpha
Helix 4
AA4
A
189 194Right-handed 310
Helix 5
AA5
A
199 203Right-handed 310
Helix 6
AA6
A
268 272Right-handed 310
Helix 7
AA7
A
409 414Right-handed alpha
Helix 8
AA8
A
479 489Right-handed alpha
Helix 9
AA9
A
505 512Right-handed alpha
Helix 10
AB1
A
513 516Right-handed 310
Helix 11
AB2
A
517 535Right-handed alpha
Helix 12
AB3
A
548 561Right-handed alpha
Helix 13
AB4
A
583 590Right-handed 310
Helix 14
AB5
A
598 606Right-handed alpha
Helix 15
AB6
A
607 608Right-handed 310
Helix 16
AB7
A
609 613Right-handed 310
Helix 17
AB8
A
636 648Right-handed alpha
Helix 18
AB9
A
672 691Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 9HJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
20 21anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 81first strand
Strand 2
A
84 89anti-parallel
Strand 3
A
98 102anti-parallel
Strand 4
A
111 114anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 127first strand
Strand 2
A
143 144anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 179first strand
Strand 2
A
183 188anti-parallel
Strand 3
A
209 214anti-parallel
Strand 4
A
224 227anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 240first strand
Strand 2
A
247 252anti-parallel
Strand 3
A
259 264anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 297first strand
Strand 2
A
300 305anti-parallel
Strand 3
A
313 318anti-parallel
Strand 4
A
326 328anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 341first strand
Strand 2
A
344 350anti-parallel
Strand 3
A
355 360anti-parallel
Strand 4
A
368 369anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 382first strand
Strand 2
A
389 395anti-parallel
Strand 3
A
398 405anti-parallel
Strand 4
A
415 419anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 437first strand
Strand 2
A
445 452anti-parallel
Strand 3
A
492 496anti-parallel
Strand 4
A
462 465parallel
Strand 5
A
543 547parallel
Strand 6
A
567 571parallel
Strand 7
A
622 628parallel
Strand 8
A
657 658parallel
Back to list of sheets
Back to top of page

There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
430 437first strand
Strand 2
A
445 452anti-parallel
Strand 3
A
492 496anti-parallel
Strand 4
A
462 465parallel
Strand 5
A
543 547parallel
Strand 6
A
567 571parallel
Strand 7
A
622 628parallel
Strand 8
A
661 662parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il