Analysis of interatomic Contacts of Structural Units in PDB entry:
9HJK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HJK entry

There are 2 chains in PDB entry 9HJK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 21ASN 582
B
 GLN 1SER 114
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9HJK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 50Right-handed alpha
Helix 2
AA2
A
52 57Right-handed alpha
Helix 3
AA3
A
58 87Right-handed alpha
Helix 4
AA4
A
92 100Right-handed alpha
Helix 5
AA5
A
104 132Right-handed alpha
Helix 6
AA6
A
163 175Right-handed alpha
Helix 7
AA7
A
176 210Right-handed alpha
Helix 8
AA8
A
211 215Right-handed 310
Helix 9
AA9
A
223 236Right-handed alpha
Helix 10
AB1
A
237 239Right-handed 310
Helix 11
AB2
A
241 248Right-handed alpha
Helix 12
AB3
A
249 252Right-handed 310
Helix 13
AB4
A
254 281Right-handed alpha
Helix 14
AB5
A
284 291Right-handed alpha
Helix 15
AB6
A
294 301Right-handed alpha
Helix 16
AB7
A
304 328Right-handed alpha
Helix 17
AB8
A
330 342Right-handed alpha
Helix 18
AB9
A
345 349Right-handed 310
Helix 19
AC1
A
359 376Right-handed alpha
Helix 20
AC2
A
377 382Right-handed alpha
Helix 21
AC3
A
386 406Right-handed alpha
Helix 22
AC4
A
459 483Right-handed alpha
Helix 23
AC5
A
488 513Right-handed alpha
Helix 24
AC6
A
516 521Right-handed 310
Helix 25
AC7
A
535 551Right-handed alpha
Helix 26
AC8
A
552 573Right-handed alpha
Helix 27
AC9
B
28 32Right-handed 310
Helix 28
AD1
B
87 91Right-handed 310
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There are 3 sheets in PDB entry 9HJK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
18 23anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
109 113parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
46 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
109 113parallel
Strand 3
B
92 98anti-parallel
Strand 4
B
104 105anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il