Analysis of interatomic Contacts of Structural Units in PDB entry:
9HJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HJN entry

There are 2 chains in PDB entry 9HJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2PHE 344
B
 ALA 2PHE 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9HJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 25Right-handed alpha
Helix 2
AA2
A
46 57Right-handed alpha
Helix 3
AA3
A
69 80Right-handed alpha
Helix 4
AA4
A
93 100Right-handed alpha
Helix 5
AA5
A
100 122Right-handed alpha
Helix 6
AA6
A
132 137Right-handed 310
Helix 7
AA7
A
155 175Right-handed alpha
Helix 8
AA8
A
208 217Right-handed alpha
Helix 9
AA9
A
244 259Right-handed alpha
Helix 10
AB1
A
277 289Right-handed alpha
Helix 11
AB2
A
311 319Right-handed alpha
Helix 12
AB3
A
325 340Right-handed alpha
Helix 13
AB4
B
12 25Right-handed alpha
Helix 14
AB5
B
46 57Right-handed alpha
Helix 15
AB6
B
69 80Right-handed alpha
Helix 16
AB7
B
93 100Right-handed alpha
Helix 17
AB8
B
100 122Right-handed alpha
Helix 18
AB9
B
132 137Right-handed 310
Helix 19
AC1
B
155 175Right-handed alpha
Helix 20
AC2
B
207 217Right-handed alpha
Helix 21
AC3
B
244 259Right-handed alpha
Helix 22
AC4
B
277 289Right-handed alpha
Helix 23
AC5
B
311 318Right-handed alpha
Helix 24
AC6
B
325 340Right-handed alpha
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There are 8 sheets in PDB entry 9HJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 64first strand
Strand 2
A
29 33parallel
Strand 3
A
4 8parallel
Strand 4
A
82 87parallel
Strand 5
A
126 130parallel
Strand 6
A
179 184parallel
Strand 7
A
264 268parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 189first strand
Strand 2
A
241 243parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 226first strand
Strand 2
A
294 297parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 239first strand
Strand 2
A
275 276anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 64first strand
Strand 2
B
29 33parallel
Strand 3
B
4 8parallel
Strand 4
B
82 87parallel
Strand 5
B
126 130parallel
Strand 6
B
179 184parallel
Strand 7
B
264 268parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 189first strand
Strand 2
B
241 243parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 226first strand
Strand 2
B
294 297parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
275 276anti-parallel
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