Analysis of interatomic Contacts of Structural Units in PDB entry:
9HJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HJO entry

There are 12 chains in PDB entry 9HJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1818THR 1818
A
 ILE 1820VAL 1847
A
 PRO 1849GLY 1852
A
 ASP 1854MET 1990
A
 HIS 1992ASP 2038
B
 PRO 15PRO 214
C
 THR 1818THR 1818
C
 ILE 1820VAL 1847
C
 PRO 1849GLY 1852
C
 ASP 1854MET 1990
C
 HIS 1992ASP 2038
D
 PRO 15LYS 24
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9HJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1825 1829Right-handed 310
Helix 2
AA2
A
1830 1840Right-handed alpha
Helix 3
AA3
A
1868 1873Right-handed alpha
Helix 4
AA4
A
1876 1889Right-handed alpha
Helix 5
AA5
A
1915 1928Right-handed alpha
Helix 6
AA6
A
1937 1955Right-handed alpha
Helix 7
AA7
A
1969 1978Right-handed alpha
Helix 8
AA8
A
1983 1994Right-handed alpha
Helix 9
AA9
A
1996 2002Right-handed alpha
Helix 10
AB1
A
2004 2012Right-handed alpha
Helix 11
AB2
A
2015 2027Right-handed alpha
Helix 12
AB3
A
2031 2035Right-handed 310
Helix 13
AB4
B
24 26Right-handed 310
Helix 14
AB5
B
28 35Right-handed alpha
Helix 15
AB6
B
62 69Right-handed alpha
Helix 16
AB7
B
72 82Right-handed alpha
Helix 17
AB8
B
96 99Right-handed 310
Helix 18
AB9
B
100 110Right-handed alpha
Helix 19
AC1
B
121 138Right-handed alpha
Helix 20
AC2
B
139 143Right-handed 310
Helix 21
AC3
B
155 164Right-handed alpha
Helix 22
AC4
B
172 181Right-handed alpha
Helix 23
AC5
B
183 190Right-handed alpha
Helix 24
AC6
B
191 200Right-handed alpha
Helix 25
AC7
B
200 213Right-handed alpha
Helix 26
AC8
C
1825 1829Right-handed 310
Helix 27
AC9
C
1830 1840Right-handed alpha
Helix 28
AD1
C
1868 1873Right-handed alpha
Helix 29
AD2
C
1876 1889Right-handed alpha
Helix 30
AD3
C
1915 1928Right-handed alpha
Helix 31
AD4
C
1937 1955Right-handed alpha
Helix 32
AD5
C
1969 1978Right-handed alpha
Helix 33
AD6
C
1983 1994Right-handed alpha
Helix 34
AD7
C
1996 2002Right-handed alpha
Helix 35
AD8
C
2004 2012Right-handed alpha
Helix 36
AD9
C
2015 2027Right-handed alpha
Helix 37
AE1
C
2031 2035Right-handed 310
Helix 38
AE2
D
24 26Right-handed 310
Helix 39
AE3
D
28 35Right-handed alpha
Helix 40
AE4
D
62 69Right-handed alpha
Helix 41
AE5
D
72 82Right-handed alpha
Helix 42
AE6
D
96 99Right-handed 310
Helix 43
AE7
D
100 110Right-handed alpha
Helix 44
AE8
D
121 138Right-handed alpha
Helix 45
AE9
D
139 143Right-handed 310
Helix 46
AF1
D
155 164Right-handed alpha
Helix 47
AF2
D
172 181Right-handed alpha
Helix 48
AF3
D
183 190Right-handed alpha
Helix 49
AF4
D
191 199Right-handed alpha
Helix 50
AF5
D
200 213Right-handed alpha
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There are 4 sheets in PDB entry 9HJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1844 1848first strand
Strand 2
A
1819 1823parallel
Strand 3
A
1855 1856anti-parallel
Strand 4
A
1861 1867anti-parallel
Strand 5
A
1893 1899parallel
Strand 6
A
1931 1935parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 43first strand
Strand 2
B
18 22parallel
Strand 3
B
50 51anti-parallel
Strand 4
B
56 61anti-parallel
Strand 5
B
86 92parallel
Strand 6
B
115 119parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1844 1848first strand
Strand 2
C
1819 1823parallel
Strand 3
C
1855 1856anti-parallel
Strand 4
C
1861 1867anti-parallel
Strand 5
C
1893 1899parallel
Strand 6
C
1931 1935parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
39 43first strand
Strand 2
D
18 22parallel
Strand 3
D
50 51anti-parallel
Strand 4
D
56 61anti-parallel
Strand 5
D
86 92parallel
Strand 6
D
115 119parallel
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