Analysis of interatomic Contacts of Structural Units in PDB entry:
9HJT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HJT entry

There are 7 chains in PDB entry 9HJT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 14	LEU 167
F	MET 1	VAL 379
G	MET 1	VAL 379
H	ASN 471	SER 773
I	ASN 471	SER 773
K	G 1	C 31
L	G 1	C 31

There are 59 helices in PDB entry 9HJT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	46	Right-handed alpha
Helix 2	AA2	A	65	77	Right-handed alpha
Helix 3	AA3	A	93	106	Right-handed alpha
Helix 4	AA4	A	121	132	Right-handed alpha
Helix 5	AA5	A	152	162	Right-handed alpha
Helix 6	AA6	F	8	13	Right-handed 310
Helix 7	AA7	F	19	23	Right-handed 310
Helix 8	AA8	F	34	46	Right-handed alpha
Helix 9	AA9	F	52	58	Right-handed 310
Helix 10	AB1	F	95	113	Right-handed alpha
Helix 11	AB2	F	133	155	Right-handed alpha
Helix 12	AB3	F	204	215	Right-handed alpha
Helix 13	AB4	F	217	225	Right-handed alpha
Helix 14	AB5	F	229	244	Right-handed alpha
Helix 15	AB6	F	248	258	Right-handed alpha
Helix 16	AB7	F	270	280	Right-handed alpha
Helix 17	AB8	F	299	306	Right-handed alpha
Helix 18	AB9	F	307	310	Right-handed 310
Helix 19	AC1	F	329	342	Right-handed alpha
Helix 20	AC2	G	8	13	Right-handed 310
Helix 21	AC3	G	19	24	Right-handed 310
Helix 22	AC4	G	35	46	Right-handed alpha
Helix 23	AC5	G	48	58	Right-handed 310
Helix 24	AC6	G	95	114	Right-handed alpha
Helix 25	AC7	G	133	156	Right-handed alpha
Helix 26	AC8	G	181	185	Right-handed 310
Helix 27	AC9	G	204	214	Right-handed alpha
Helix 28	AD1	G	217	228	Right-handed alpha
Helix 29	AD2	G	229	245	Right-handed alpha
Helix 30	AD3	G	248	258	Right-handed alpha
Helix 31	AD4	G	270	280	Right-handed alpha
Helix 32	AD5	G	298	306	Right-handed alpha
Helix 33	AD6	G	330	342	Right-handed alpha
Helix 34	AD7	H	474	497	Right-handed alpha
Helix 35	AD8	H	520	535	Right-handed alpha
Helix 36	AD9	H	544	562	Right-handed alpha
Helix 37	AE1	H	571	573	Right-handed 310
Helix 38	AE2	H	574	587	Right-handed alpha
Helix 39	AE3	H	604	611	Right-handed alpha
Helix 40	AE4	H	618	634	Right-handed alpha
Helix 41	AE5	H	638	644	Right-handed alpha
Helix 42	AE6	H	697	700	Right-handed 310
Helix 43	AE7	H	701	713	Right-handed alpha
Helix 44	AE8	H	714	718	Right-handed 310
Helix 45	AE9	H	746	759	Right-handed alpha
Helix 46	AF1	H	760	773	Right-handed alpha
Helix 47	AF2	I	474	497	Right-handed alpha
Helix 48	AF3	I	520	535	Right-handed alpha
Helix 49	AF4	I	544	562	Right-handed alpha
Helix 50	AF5	I	571	573	Right-handed 310
Helix 51	AF6	I	574	586	Right-handed alpha
Helix 52	AF7	I	604	611	Right-handed alpha
Helix 53	AF8	I	618	634	Right-handed alpha
Helix 54	AF9	I	638	644	Right-handed alpha
Helix 55	AG1	I	683	687	Right-handed alpha
Helix 56	AG2	I	697	700	Right-handed 310
Helix 57	AG3	I	701	712	Right-handed alpha
Helix 58	AG4	I	746	758	Right-handed alpha
Helix 59	AG5	I	760	773	Right-handed alpha

There are 13 sheets in PDB entry 9HJT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	22	first strand
Strand 2	A	31	32	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	62	63	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	90	91	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	71	74	first strand
Strand 2	F	81	84	anti-parallel
Strand 3	F	176	180	anti-parallel
Strand 4	F	121	122	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	87	89	first strand
Strand 2	F	172	174	anti-parallel
Strand 3	F	125	129	anti-parallel
Strand 4	F	163	167	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	325	328	first strand
Strand 2	F	196	199	anti-parallel
Strand 3	F	352	359	anti-parallel
Strand 4	F	286	295	anti-parallel
Strand 5	F	366	374	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	74	first strand
Strand 2	G	81	86	anti-parallel
Strand 3	G	175	180	anti-parallel
Strand 4	G	121	122	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	166	first strand
Strand 2	G	125	128	parallel
Strand 3	G	171	173	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	325	329	first strand
Strand 2	G	195	199	anti-parallel
Strand 3	G	352	359	anti-parallel
Strand 4	G	286	293	anti-parallel
Strand 5	G	365	372	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	651	653	first strand
Strand 2	H	667	669	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	726	728	first strand
Strand 2	H	740	744	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	651	653	first strand
Strand 2	I	667	671	anti-parallel
Strand 3	I	688	690	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	726	728	first strand
Strand 2	I	740	744	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HJT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HJT