Analysis of interatomic Contacts of Structural Units in PDB entry:
9HJU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HJU entry

There are 11 chains in PDB entry 9HJU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 14	LEU 167
B	MET 1	VAL 379
C	MET 1	VAL 379
D	ASN 471	SER 773
E	ASN 471	SER 773
F	MET 1	VAL 379
G	MET 1	VAL 379
H	ASN 471	SER 773
I	ASN 471	SER 773
K	G 1	C 31
L	G 1	C 31

There are112 helices in PDB entry 9HJU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	46	Right-handed alpha
Helix 2	AA2	A	66	77	Right-handed alpha
Helix 3	AA3	A	93	106	Right-handed alpha
Helix 4	AA4	A	121	132	Right-handed alpha
Helix 5	AA5	A	152	162	Right-handed alpha
Helix 6	AA6	B	8	13	Right-handed 310
Helix 7	AA7	B	19	24	Right-handed 310
Helix 8	AA8	B	34	47	Right-handed alpha
Helix 9	AA9	B	49	58	Right-handed 310
Helix 10	AB1	B	76	80	Right-handed 310
Helix 11	AB2	B	95	114	Right-handed alpha
Helix 12	AB3	B	133	155	Right-handed alpha
Helix 13	AB4	B	204	213	Right-handed alpha
Helix 14	AB5	B	217	226	Right-handed alpha
Helix 15	AB6	B	229	245	Right-handed alpha
Helix 16	AB7	B	248	258	Right-handed alpha
Helix 17	AB8	B	269	282	Right-handed alpha
Helix 18	AB9	B	298	306	Right-handed alpha
Helix 19	AC1	B	311	315	Right-handed 310
Helix 20	AC2	B	329	342	Right-handed alpha
Helix 21	AC3	C	19	24	Right-handed 310
Helix 22	AC4	C	34	47	Right-handed alpha
Helix 23	AC5	C	52	58	Right-handed 310
Helix 24	AC6	C	95	114	Right-handed alpha
Helix 25	AC7	C	133	156	Right-handed alpha
Helix 26	AC8	C	181	185	Right-handed 310
Helix 27	AC9	C	204	217	Right-handed alpha
Helix 28	AD1	C	217	226	Right-handed alpha
Helix 29	AD2	C	229	244	Right-handed alpha
Helix 30	AD3	C	248	258	Right-handed alpha
Helix 31	AD4	C	269	280	Right-handed alpha
Helix 32	AD5	C	298	306	Right-handed alpha
Helix 33	AD6	C	330	342	Right-handed alpha
Helix 34	AD7	D	474	496	Right-handed alpha
Helix 35	AD8	D	520	535	Right-handed alpha
Helix 36	AD9	D	544	561	Right-handed alpha
Helix 37	AE1	D	571	573	Right-handed 310
Helix 38	AE2	D	574	587	Right-handed alpha
Helix 39	AE3	D	604	612	Right-handed alpha
Helix 40	AE4	D	618	634	Right-handed alpha
Helix 41	AE5	D	638	643	Right-handed alpha
Helix 42	AE6	D	697	700	Right-handed 310
Helix 43	AE7	D	701	713	Right-handed alpha
Helix 44	AE8	D	746	759	Right-handed alpha
Helix 45	AE9	D	760	773	Right-handed alpha
Helix 46	AF1	E	474	497	Right-handed alpha
Helix 47	AF2	E	520	535	Right-handed alpha
Helix 48	AF3	E	544	562	Right-handed alpha
Helix 49	AF4	E	575	586	Right-handed alpha
Helix 50	AF5	E	604	611	Right-handed alpha
Helix 51	AF6	E	618	634	Right-handed alpha
Helix 52	AF7	E	638	645	Right-handed alpha
Helix 53	AF8	E	684	686	Right-handed 310
Helix 54	AF9	E	697	700	Right-handed 310
Helix 55	AG1	E	701	712	Right-handed alpha
Helix 56	AG2	E	746	758	Right-handed alpha
Helix 57	AG3	E	760	772	Right-handed alpha
Helix 58	AG4	F	19	23	Right-handed 310
Helix 59	AG5	F	35	47	Right-handed alpha
Helix 60	AG6	F	49	58	Right-handed 310
Helix 61	AG7	F	95	113	Right-handed alpha
Helix 62	AG8	F	133	155	Right-handed alpha
Helix 63	AG9	F	181	185	Right-handed 310
Helix 64	AH1	F	204	215	Right-handed alpha
Helix 65	AH2	F	217	223	Right-handed alpha
Helix 66	AH3	F	230	245	Right-handed alpha
Helix 67	AH4	F	248	258	Right-handed alpha
Helix 68	AH5	F	270	282	Right-handed alpha
Helix 69	AH6	F	299	306	Right-handed alpha
Helix 70	AH7	F	307	310	Right-handed 310
Helix 71	AH8	F	329	342	Right-handed alpha
Helix 72	AH9	G	8	13	Right-handed 310
Helix 73	AI1	G	19	24	Right-handed 310
Helix 74	AI2	G	35	46	Right-handed alpha
Helix 75	AI3	G	48	53	Right-handed alpha
Helix 76	AI4	G	54	58	Right-handed 310
Helix 77	AI5	G	95	113	Right-handed alpha
Helix 78	AI6	G	133	155	Right-handed alpha
Helix 79	AI7	G	181	185	Right-handed 310
Helix 80	AI8	G	204	215	Right-handed alpha
Helix 81	AI9	G	217	228	Right-handed alpha
Helix 82	AJ1	G	229	244	Right-handed alpha
Helix 83	AJ2	G	248	258	Right-handed alpha
Helix 84	AJ3	G	270	281	Right-handed alpha
Helix 85	AJ4	G	298	306	Right-handed alpha
Helix 86	AJ5	G	330	342	Right-handed alpha
Helix 87	AJ6	H	474	497	Right-handed alpha
Helix 88	AJ7	H	520	535	Right-handed alpha
Helix 89	AJ8	H	544	562	Right-handed alpha
Helix 90	AJ9	H	571	573	Right-handed 310
Helix 91	AK1	H	574	586	Right-handed alpha
Helix 92	AK2	H	604	611	Right-handed alpha
Helix 93	AK3	H	618	634	Right-handed alpha
Helix 94	AK4	H	638	645	Right-handed alpha
Helix 95	AK5	H	677	681	Right-handed 310
Helix 96	AK6	H	697	700	Right-handed 310
Helix 97	AK7	H	701	713	Right-handed alpha
Helix 98	AK8	H	746	758	Right-handed alpha
Helix 99	AK9	H	760	773	Right-handed alpha
Helix 100	AL1	I	474	497	Right-handed alpha
Helix 101	AL2	I	520	535	Right-handed alpha
Helix 102	AL3	I	544	562	Right-handed alpha
Helix 103	AL4	I	571	573	Right-handed 310
Helix 104	AL5	I	574	587	Right-handed alpha
Helix 105	AL6	I	604	611	Right-handed alpha
Helix 106	AL7	I	618	634	Right-handed alpha
Helix 107	AL8	I	638	645	Right-handed alpha
Helix 108	AL9	I	683	687	Right-handed alpha
Helix 109	AM1	I	697	700	Right-handed 310
Helix 110	AM2	I	701	712	Right-handed alpha
Helix 111	AM3	I	746	758	Right-handed alpha
Helix 112	AM4	I	760	773	Right-handed alpha

There are 21 sheets in PDB entry 9HJU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	22	first strand
Strand 2	A	31	32	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	62	63	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	90	91	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	118	119	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	89	first strand
Strand 2	B	172	180	anti-parallel
Strand 3	B	121	129	anti-parallel
Strand 4	B	159	167	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	328	first strand
Strand 2	B	196	199	anti-parallel
Strand 3	B	352	359	anti-parallel
Strand 4	B	286	296	anti-parallel
Strand 5	B	364	375	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	C	81	89	anti-parallel
Strand 3	C	171	180	anti-parallel
Strand 4	C	121	122	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	74	first strand
Strand 2	C	81	89	anti-parallel
Strand 3	C	171	180	anti-parallel
Strand 4	C	125	128	anti-parallel
Strand 5	C	163	166	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	329	first strand
Strand 2	C	195	199	anti-parallel
Strand 3	C	352	359	anti-parallel
Strand 4	C	286	293	anti-parallel
Strand 5	C	365	372	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	669	670	first strand
Strand 2	D	689	690	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	726	728	first strand
Strand 2	D	740	744	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	651	653	first strand
Strand 2	E	667	671	anti-parallel
Strand 3	E	688	691	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	726	728	first strand
Strand 2	E	740	744	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	74	first strand
Strand 2	F	81	89	anti-parallel
Strand 3	F	172	180	anti-parallel
Strand 4	F	121	129	anti-parallel
Strand 5	F	158	167	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	325	328	first strand
Strand 2	F	196	199	anti-parallel
Strand 3	F	352	359	anti-parallel
Strand 4	F	286	296	anti-parallel
Strand 5	F	364	375	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	71	74	first strand
Strand 2	G	81	89	anti-parallel
Strand 3	G	172	180	anti-parallel
Strand 4	G	121	128	anti-parallel
Strand 5	G	163	166	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	325	329	first strand
Strand 2	G	195	199	anti-parallel
Strand 3	G	352	359	anti-parallel
Strand 4	G	286	293	anti-parallel
Strand 5	G	363	372	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	651	653	first strand
Strand 2	H	667	669	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	726	728	first strand
Strand 2	H	740	744	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	651	653	first strand
Strand 2	I	667	671	anti-parallel
Strand 3	I	688	690	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	726	728	first strand
Strand 2	I	740	744	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HJU

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HJU