Analysis of interatomic Contacts of Structural Units in PDB entry:
9HK6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HK6 entry

There are 4 chains in PDB entry 9HK6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	HIS 0	MET 466
C	HIS 0	THR 477
D	PRO -4	ALA 464
A	HIS 0	ASN 265

There are 61 helices in PDB entry 9HK6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	9	11	Right-handed 310
Helix 2	AA2	B	23	27	Right-handed 310
Helix 3	AA3	B	53	63	Right-handed alpha
Helix 4	AA4	B	74	87	Right-handed alpha
Helix 5	AA5	B	104	116	Right-handed alpha
Helix 6	AA6	B	146	150	Right-handed 310
Helix 7	AA7	B	155	157	Right-handed 310
Helix 8	AA8	B	165	176	Right-handed alpha
Helix 9	AA9	B	197	199	Right-handed 310
Helix 10	AB1	B	229	239	Right-handed alpha
Helix 11	AB2	B	252	266	Right-handed alpha
Helix 12	AB3	B	278	289	Right-handed alpha
Helix 13	AB4	B	304	309	Right-handed alpha
Helix 14	AB5	B	314	326	Right-handed alpha
Helix 15	AB6	B	341	352	Right-handed alpha
Helix 16	AB7	B	359	363	Right-handed 310
Helix 17	AB8	B	425	445	Right-handed alpha
Helix 18	AB9	B	448	456	Right-handed alpha
Helix 19	AC1	B	462	466	Right-handed 310
Helix 20	AC2	C	9	11	Right-handed 310
Helix 21	AC3	C	23	27	Right-handed 310
Helix 22	AC4	C	53	63	Right-handed alpha
Helix 23	AC5	C	74	87	Right-handed alpha
Helix 24	AC6	C	227	238	Right-handed alpha
Helix 25	AC7	C	254	266	Right-handed alpha
Helix 26	AC8	C	278	288	Right-handed alpha
Helix 27	AC9	C	304	309	Right-handed alpha
Helix 28	AD1	C	314	326	Right-handed alpha
Helix 29	AD2	C	341	352	Right-handed alpha
Helix 30	AD3	C	388	397	Right-handed alpha
Helix 31	AD4	C	425	445	Right-handed alpha
Helix 32	AD5	C	448	456	Right-handed alpha
Helix 33	AD6	C	462	467	Right-handed alpha
Helix 34	AD7	D	9	11	Right-handed 310
Helix 35	AD8	D	23	27	Right-handed 310
Helix 36	AD9	D	53	63	Right-handed alpha
Helix 37	AE1	D	74	87	Right-handed alpha
Helix 38	AE2	D	225	229	Right-handed 310
Helix 39	AE3	D	252	265	Right-handed alpha
Helix 40	AE4	D	278	288	Right-handed alpha
Helix 41	AE5	D	304	309	Right-handed alpha
Helix 42	AE6	D	314	325	Right-handed alpha
Helix 43	AE7	D	341	352	Right-handed alpha
Helix 44	AE8	D	425	445	Right-handed alpha
Helix 45	AE9	D	448	456	Right-handed alpha
Helix 46	AF1	A	9	11	Right-handed 310
Helix 47	AF2	A	23	27	Right-handed 310
Helix 48	AF3	A	53	63	Right-handed alpha
Helix 49	AF4	A	74	87	Right-handed alpha
Helix 50	AF5	A	104	116	Right-handed alpha
Helix 51	AF6	A	146	150	Right-handed 310
Helix 52	AF7	A	165	176	Right-handed alpha
Helix 53	AF8	A	197	199	Right-handed 310
Helix 54	AF9	A	227	239	Right-handed alpha
Helix 55	AG1	A	252	266	Right-handed alpha
Helix 56	AG2	A	278	288	Right-handed alpha
Helix 57	AG3	A	304	309	Right-handed alpha
Helix 58	AG4	A	314	327	Right-handed alpha
Helix 59	AG5	A	341	352	Right-handed alpha
Helix 60	AG6	A	425	445	Right-handed alpha
Helix 61	AG7	A	448	456	Right-handed alpha

There are 19 sheets in PDB entry 9HK6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	D	458	460	parallel
Strand 3	D	13	15	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	458	460	anti-parallel
Strand 3	C	3	6	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	32	first strand
Strand 2	B	38	39	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	45	first strand
Strand 2	B	66	69	parallel
Strand 3	B	219	222	parallel
Strand 4	B	242	246	parallel
Strand 5	B	270	276	parallel
Strand 6	B	292	295	parallel
Strand 7	B	333	336	parallel
Strand 8	B	355	358	parallel
Strand 9	B	43	45	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	124	first strand
Strand 2	B	127	132	anti-parallel
Strand 3	B	152	153	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	180	184	parallel
Strand 3	B	193	195	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	15	first strand
Strand 2	C	458	460	anti-parallel
Strand 3	A	3	6	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	32	first strand
Strand 2	C	38	39	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	45	first strand
Strand 2	C	66	69	parallel
Strand 3	C	219	222	parallel
Strand 4	C	242	245	parallel
Strand 5	C	270	276	parallel
Strand 6	C	292	295	parallel
Strand 7	C	333	336	parallel
Strand 8	C	355	358	parallel
Strand 9	C	43	45	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	374	first strand
Strand 2	C	379	384	anti-parallel
Strand 3	C	417	421	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	475	476	first strand
Strand 2	A	417	421	anti-parallel
Strand 3	A	380	384	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	A	458	460	parallel
Strand 3	A	13	15	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	32	first strand
Strand 2	D	38	39	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	45	first strand
Strand 2	D	66	69	parallel
Strand 3	D	219	222	parallel
Strand 4	D	242	245	parallel
Strand 5	D	270	276	parallel
Strand 6	D	292	295	parallel
Strand 7	D	333	336	parallel
Strand 8	D	355	358	parallel
Strand 9	D	43	45	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	380	382	first strand
Strand 2	D	419	421	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	38	39	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	66	69	parallel
Strand 3	A	219	222	parallel
Strand 4	A	242	246	parallel
Strand 5	A	270	276	parallel
Strand 6	A	292	295	parallel
Strand 7	A	333	336	parallel
Strand 8	A	355	358	parallel
Strand 9	A	43	45	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	124	first strand
Strand 2	A	127	132	anti-parallel
Strand 3	A	152	153	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	161	first strand
Strand 2	A	180	184	parallel
Strand 3	A	193	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HK6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HK6