Analysis of interatomic Contacts of Structural Units in PDB entry:
9HKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HKF entry

There are 2 chains in PDB entry 9HKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 3GLU 434
A
 GLU 3GLU 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9HKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
44 49Right-handed 310
Helix 2
AA2
B
51 56Right-handed alpha
Helix 3
AA3
B
80 95Right-handed alpha
Helix 4
AA4
B
106 119Right-handed alpha
Helix 5
AA5
B
137 141Right-handed 310
Helix 6
AA6
B
170 178Right-handed alpha
Helix 7
AA7
B
180 185Right-handed alpha
Helix 8
AA8
B
188 193Right-handed 310
Helix 9
AA9
B
198 211Right-handed alpha
Helix 10
AB1
B
263 293Right-handed alpha
Helix 11
AB2
B
295 303Right-handed alpha
Helix 12
AB3
B
306 311Right-handed alpha
Helix 13
AB4
B
313 317Right-handed 310
Helix 14
AB5
B
322 331Right-handed alpha
Helix 15
AB6
B
332 334Right-handed 310
Helix 16
AB7
B
335 338Right-handed 310
Helix 17
AB8
B
339 349Right-handed alpha
Helix 18
AB9
B
355 372Right-handed alpha
Helix 19
AC1
B
388 399Right-handed alpha
Helix 20
AC2
B
413 418Right-handed alpha
Helix 21
AC3
B
418 432Right-handed alpha
Helix 22
AC4
A
44 49Right-handed 310
Helix 23
AC5
A
51 56Right-handed alpha
Helix 24
AC6
A
80 95Right-handed alpha
Helix 25
AC7
A
106 119Right-handed alpha
Helix 26
AC8
A
137 141Right-handed 310
Helix 27
AC9
A
170 178Right-handed alpha
Helix 28
AD1
A
180 184Right-handed 310
Helix 29
AD2
A
188 193Right-handed 310
Helix 30
AD3
A
198 211Right-handed alpha
Helix 31
AD4
A
260 293Right-handed alpha
Helix 32
AD5
A
295 303Right-handed alpha
Helix 33
AD6
A
306 311Right-handed alpha
Helix 34
AD7
A
313 317Right-handed 310
Helix 35
AD8
A
322 331Right-handed alpha
Helix 36
AD9
A
332 334Right-handed 310
Helix 37
AE1
A
335 338Right-handed 310
Helix 38
AE2
A
339 349Right-handed alpha
Helix 39
AE3
A
355 372Right-handed alpha
Helix 40
AE4
A
388 399Right-handed alpha
Helix 41
AE5
A
413 418Right-handed alpha
Helix 42
AE6
A
418 431Right-handed alpha
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There are 4 sheets in PDB entry 9HKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 17first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
60 64anti-parallel
Strand 4
B
34 38parallel
Strand 5
B
100 105parallel
Strand 6
B
123 129parallel
Strand 7
B
376 383parallel
Strand 8
B
402 410parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 169first strand
Strand 2
B
154 157anti-parallel
Strand 3
B
245 253anti-parallel
Strand 4
B
228 239anti-parallel
Strand 5
B
215 222anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 17first strand
Strand 2
A
20 27anti-parallel
Strand 3
A
61 64anti-parallel
Strand 4
A
35 38parallel
Strand 5
A
100 105parallel
Strand 6
A
123 129parallel
Strand 7
A
376 383parallel
Strand 8
A
402 410parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 169first strand
Strand 2
A
154 157anti-parallel
Strand 3
A
245 252anti-parallel
Strand 4
A
228 239anti-parallel
Strand 5
A
215 222anti-parallel
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