Analysis of interatomic Contacts of Structural Units in PDB entry:
9HKV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HKV entry

There are 4 chains in PDB entry 9HKV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 12	TYR 469
B	ASP 12	TYR 469
C	ASP 12	TYR 469
D	ASP 12	TYR 469

There are 88 helices in PDB entry 9HKV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	35	Right-handed alpha
Helix 2	AA2	A	35	45	Right-handed alpha
Helix 3	AA3	A	65	76	Right-handed alpha
Helix 4	AA4	A	93	100	Right-handed alpha
Helix 5	AA5	A	113	125	Right-handed alpha
Helix 6	AA6	A	142	150	Right-handed alpha
Helix 7	AA7	A	153	158	Right-handed 310
Helix 8	AA8	A	168	179	Right-handed alpha
Helix 9	AA9	A	191	216	Right-handed alpha
Helix 10	AB1	A	230	242	Right-handed alpha
Helix 11	AB2	A	253	263	Right-handed alpha
Helix 12	AB3	A	271	275	Right-handed 310
Helix 13	AB4	A	279	283	Right-handed 310
Helix 14	AB5	A	284	289	Right-handed alpha
Helix 15	AB6	A	330	337	Right-handed alpha
Helix 16	AB7	A	387	404	Right-handed alpha
Helix 17	AB8	A	410	415	Right-handed alpha
Helix 18	AB9	A	416	418	Right-handed 310
Helix 19	AC1	A	424	439	Right-handed alpha
Helix 20	AC2	A	447	455	Right-handed alpha
Helix 21	AC3	B	17	19	Right-handed 310
Helix 22	AC4	B	20	33	Right-handed alpha
Helix 23	AC5	B	35	46	Right-handed alpha
Helix 24	AC6	B	63	76	Right-handed alpha
Helix 25	AC7	B	91	100	Right-handed alpha
Helix 26	AC8	B	112	124	Right-handed alpha
Helix 27	AC9	B	141	150	Right-handed alpha
Helix 28	AD1	B	151	157	Right-handed 310
Helix 29	AD2	B	165	173	Right-handed alpha
Helix 30	AD3	B	174	179	Right-handed 310
Helix 31	AD4	B	191	196	Right-handed alpha
Helix 32	AD5	B	199	216	Right-handed alpha
Helix 33	AD6	B	230	242	Right-handed alpha
Helix 34	AD7	B	253	263	Right-handed alpha
Helix 35	AD8	B	271	275	Right-handed 310
Helix 36	AD9	B	284	289	Right-handed alpha
Helix 37	AE1	B	305	311	Right-handed alpha
Helix 38	AE2	B	330	335	Right-handed alpha
Helix 39	AE3	B	374	379	Right-handed alpha
Helix 40	AE4	B	383	403	Right-handed alpha
Helix 41	AE5	B	405	409	Right-handed 310
Helix 42	AE6	B	410	418	Right-handed alpha
Helix 43	AE7	B	424	438	Right-handed alpha
Helix 44	AE8	B	447	455	Right-handed alpha
Helix 45	AE9	C	17	19	Right-handed 310
Helix 46	AF1	C	20	25	Right-handed alpha
Helix 47	AF2	C	27	32	Right-handed alpha
Helix 48	AF3	C	35	45	Right-handed alpha
Helix 49	AF4	C	64	75	Right-handed alpha
Helix 50	AF5	C	91	102	Right-handed alpha
Helix 51	AF6	C	113	125	Right-handed alpha
Helix 52	AF7	C	141	149	Right-handed alpha
Helix 53	AF8	C	152	157	Right-handed 310
Helix 54	AF9	C	165	179	Right-handed alpha
Helix 55	AG1	C	191	199	Right-handed alpha
Helix 56	AG2	C	202	216	Right-handed alpha
Helix 57	AG3	C	230	244	Right-handed alpha
Helix 58	AG4	C	253	264	Right-handed alpha
Helix 59	AG5	C	271	275	Right-handed 310
Helix 60	AG6	C	279	283	Right-handed 310
Helix 61	AG7	C	284	289	Right-handed alpha
Helix 62	AG8	C	305	311	Right-handed alpha
Helix 63	AG9	C	329	334	Right-handed alpha
Helix 64	AH1	C	383	404	Right-handed alpha
Helix 65	AH2	C	410	415	Right-handed alpha
Helix 66	AH3	C	424	440	Right-handed alpha
Helix 67	AH4	D	26	35	Right-handed alpha
Helix 68	AH5	D	35	45	Right-handed alpha
Helix 69	AH6	D	66	76	Right-handed alpha
Helix 70	AH7	D	95	102	Right-handed alpha
Helix 71	AH8	D	116	121	Right-handed alpha
Helix 72	AH9	D	143	150	Right-handed alpha
Helix 73	AI1	D	153	158	Right-handed 310
Helix 74	AI2	D	165	178	Right-handed alpha
Helix 75	AI3	D	191	199	Right-handed alpha
Helix 76	AI4	D	199	215	Right-handed alpha
Helix 77	AI5	D	230	242	Right-handed alpha
Helix 78	AI6	D	253	264	Right-handed alpha
Helix 79	AI7	D	271	275	Right-handed 310
Helix 80	AI8	D	284	289	Right-handed alpha
Helix 81	AI9	D	305	311	Right-handed alpha
Helix 82	AJ1	D	329	334	Right-handed alpha
Helix 83	AJ2	D	373	378	Right-handed alpha
Helix 84	AJ3	D	383	403	Right-handed alpha
Helix 85	AJ4	D	405	409	Right-handed 310
Helix 86	AJ5	D	410	415	Right-handed alpha
Helix 87	AJ6	D	424	437	Right-handed alpha
Helix 88	AJ7	D	447	455	Right-handed alpha

There are 9 sheets in PDB entry 9HKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	80	first strand
Strand 2	A	55	58	parallel
Strand 3	A	135	138	parallel
Strand 4	A	160	163	parallel
Strand 5	A	185	187	parallel
Strand 6	A	420	422	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	246	250	parallel
Strand 3	A	223	227	parallel
Strand 4	A	293	296	parallel
Strand 5	A	317	320	parallel
Strand 6	A	364	367	parallel
Strand 7	A	347	350	anti-parallel
Strand 8	A	338	341	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	81	first strand
Strand 2	B	55	58	parallel
Strand 3	B	135	137	parallel
Strand 4	B	161	163	parallel
Strand 5	B	185	187	parallel
Strand 6	B	420	422	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	246	250	parallel
Strand 3	B	223	227	parallel
Strand 4	B	293	296	parallel
Strand 5	B	317	320	parallel
Strand 6	B	364	367	parallel
Strand 7	B	346	350	anti-parallel
Strand 8	B	339	343	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	55	58	parallel
Strand 3	C	135	137	parallel
Strand 4	C	160	163	parallel
Strand 5	C	185	187	parallel
Strand 6	C	420	422	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	250	first strand
Strand 2	C	222	227	parallel
Strand 3	C	293	296	parallel
Strand 4	C	317	320	parallel
Strand 5	C	364	368	parallel
Strand 6	C	346	350	anti-parallel
Strand 7	C	339	343	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	83	first strand
Strand 2	D	105	106	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	137	first strand
Strand 2	D	160	163	parallel
Strand 3	D	185	187	parallel
Strand 4	D	421	422	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	246	250	parallel
Strand 3	D	223	227	parallel
Strand 4	D	293	296	parallel
Strand 5	D	317	320	parallel
Strand 6	D	364	367	parallel
Strand 7	D	346	350	anti-parallel
Strand 8	D	338	343	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HKV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HKV