Analysis of interatomic Contacts of Structural Units in PDB entry:
9HKW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HKW entry

There are 4 chains in PDB entry 9HKW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 12TYR 469
B
 ASP 12TYR 469
C
 ASP 12TYR 469
D
 THR 11TYR 469
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 91 helices in PDB entry 9HKW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 35Right-handed alpha
Helix 2
AA2
A
35 45Right-handed alpha
Helix 3
AA3
A
66 76Right-handed alpha
Helix 4
AA4
A
91 101Right-handed alpha
Helix 5
AA5
A
116 125Right-handed alpha
Helix 6
AA6
A
145 150Right-handed alpha
Helix 7
AA7
A
151 158Right-handed 310
Helix 8
AA8
A
165 178Right-handed alpha
Helix 9
AA9
A
191 200Right-handed alpha
Helix 10
AB1
A
200 205Right-handed alpha
Helix 11
AB2
A
206 216Right-handed alpha
Helix 12
AB3
A
230 242Right-handed alpha
Helix 13
AB4
A
253 262Right-handed alpha
Helix 14
AB5
A
271 275Right-handed 310
Helix 15
AB6
A
284 289Right-handed alpha
Helix 16
AB7
A
307 312Right-handed alpha
Helix 17
AB8
A
373 378Right-handed alpha
Helix 18
AB9
A
383 403Right-handed alpha
Helix 19
AC1
A
410 417Right-handed alpha
Helix 20
AC2
A
424 437Right-handed alpha
Helix 21
AC3
A
447 455Right-handed alpha
Helix 22
AC4
B
17 19Right-handed 310
Helix 23
AC5
B
20 32Right-handed alpha
Helix 24
AC6
B
35 45Right-handed alpha
Helix 25
AC7
B
63 76Right-handed alpha
Helix 26
AC8
B
91 100Right-handed alpha
Helix 27
AC9
B
115 125Right-handed alpha
Helix 28
AD1
B
141 150Right-handed alpha
Helix 29
AD2
B
154 158Right-handed 310
Helix 30
AD3
B
165 177Right-handed alpha
Helix 31
AD4
B
191 200Right-handed alpha
Helix 32
AD5
B
200 215Right-handed alpha
Helix 33
AD6
B
230 244Right-handed alpha
Helix 34
AD7
B
253 263Right-handed alpha
Helix 35
AD8
B
271 275Right-handed 310
Helix 36
AD9
B
279 283Right-handed 310
Helix 37
AE1
B
284 289Right-handed alpha
Helix 38
AE2
B
305 310Right-handed alpha
Helix 39
AE3
B
329 337Right-handed alpha
Helix 40
AE4
B
374 379Right-handed alpha
Helix 41
AE5
B
383 403Right-handed alpha
Helix 42
AE6
B
405 409Right-handed 310
Helix 43
AE7
B
410 415Right-handed alpha
Helix 44
AE8
B
424 437Right-handed alpha
Helix 45
AE9
B
447 455Right-handed alpha
Helix 46
AF1
C
20 32Right-handed alpha
Helix 47
AF2
C
35 45Right-handed alpha
Helix 48
AF3
C
63 76Right-handed alpha
Helix 49
AF4
C
91 102Right-handed alpha
Helix 50
AF5
C
113 119Right-handed alpha
Helix 51
AF6
C
141 150Right-handed alpha
Helix 52
AF7
C
151 158Right-handed 310
Helix 53
AF8
C
168 177Right-handed alpha
Helix 54
AF9
C
191 199Right-handed alpha
Helix 55
AG1
C
202 215Right-handed alpha
Helix 56
AG2
C
230 242Right-handed alpha
Helix 57
AG3
C
253 263Right-handed alpha
Helix 58
AG4
C
271 275Right-handed 310
Helix 59
AG5
C
279 283Right-handed 310
Helix 60
AG6
C
284 289Right-handed alpha
Helix 61
AG7
C
305 311Right-handed alpha
Helix 62
AG8
C
330 337Right-handed alpha
Helix 63
AG9
C
370 372Right-handed 310
Helix 64
AH1
C
388 405Right-handed alpha
Helix 65
AH2
C
410 415Right-handed alpha
Helix 66
AH3
C
416 418Right-handed 310
Helix 67
AH4
C
424 439Right-handed alpha
Helix 68
AH5
C
447 455Right-handed alpha
Helix 69
AH6
D
20 33Right-handed alpha
Helix 70
AH7
D
35 45Right-handed alpha
Helix 71
AH8
D
64 76Right-handed alpha
Helix 72
AH9
D
93 102Right-handed alpha
Helix 73
AI1
D
112 124Right-handed alpha
Helix 74
AI2
D
141 150Right-handed alpha
Helix 75
AI3
D
151 158Right-handed 310
Helix 76
AI4
D
165 178Right-handed alpha
Helix 77
AI5
D
191 196Right-handed alpha
Helix 78
AI6
D
200 215Right-handed alpha
Helix 79
AI7
D
230 242Right-handed alpha
Helix 80
AI8
D
253 263Right-handed alpha
Helix 81
AI9
D
271 275Right-handed 310
Helix 82
AJ1
D
284 289Right-handed alpha
Helix 83
AJ2
D
305 312Right-handed alpha
Helix 84
AJ3
D
329 337Right-handed alpha
Helix 85
AJ4
D
370 372Right-handed 310
Helix 86
AJ5
D
373 378Right-handed alpha
Helix 87
AJ6
D
387 405Right-handed alpha
Helix 88
AJ7
D
406 409Right-handed 310
Helix 89
AJ8
D
410 415Right-handed alpha
Helix 90
AJ9
D
424 439Right-handed alpha
Helix 91
AK1
D
447 455Right-handed alpha
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There are 9 sheets in PDB entry 9HKW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 137first strand
Strand 2
A
160 163parallel
Strand 3
A
185 187parallel
Strand 4
A
421 422parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
246 250parallel
Strand 3
A
223 227parallel
Strand 4
A
293 296parallel
Strand 5
A
317 320parallel
Strand 6
A
364 367parallel
Strand 7
A
346 350anti-parallel
Strand 8
A
338 343anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 81first strand
Strand 2
B
55 58parallel
Strand 3
B
135 137parallel
Strand 4
B
160 163parallel
Strand 5
B
185 187parallel
Strand 6
B
420 422parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
245 250parallel
Strand 3
B
222 227parallel
Strand 4
B
293 296parallel
Strand 5
B
315 320parallel
Strand 6
B
364 367parallel
Strand 7
B
346 350anti-parallel
Strand 8
B
339 343anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 81first strand
Strand 2
C
55 58parallel
Strand 3
C
135 138parallel
Strand 4
C
161 163parallel
Strand 5
C
185 187parallel
Strand 6
C
420 422parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
266 267first strand
Strand 2
C
246 250parallel
Strand 3
C
223 227parallel
Strand 4
C
293 296parallel
Strand 5
C
317 320parallel
Strand 6
C
364 368parallel
Strand 7
C
346 350anti-parallel
Strand 8
C
338 343anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
14 15first strand
Strand 2
D
105 107parallel
Strand 3
D
80 83parallel
Strand 4
D
56 59parallel
Strand 5
D
135 138parallel
Strand 6
D
160 163parallel
Strand 7
D
185 187parallel
Strand 8
D
420 421parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
125 126first strand
Strand 2
D
129 130anti-parallel
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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
266 267first strand
Strand 2
D
246 250parallel
Strand 3
D
223 227parallel
Strand 4
D
293 296parallel
Strand 5
D
317 320parallel
Strand 6
D
365 368parallel
Strand 7
D
346 350anti-parallel
Strand 8
D
338 343anti-parallel
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