Analysis of interatomic Contacts of Structural Units in PDB entry:
9HKY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HKY entry

There are 4 chains in PDB entry 9HKY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 22	TYR 469
B	ASP 17	TYR 469
C	VAL 15	TYR 469
D	ASP 17	TYR 469

There are 87 helices in PDB entry 9HKY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	25	Right-handed 310
Helix 2	AA2	A	26	34	Right-handed alpha
Helix 3	AA3	A	35	46	Right-handed alpha
Helix 4	AA4	A	67	77	Right-handed alpha
Helix 5	AA5	A	91	100	Right-handed alpha
Helix 6	AA6	A	112	125	Right-handed alpha
Helix 7	AA7	A	142	146	Right-handed 310
Helix 8	AA8	A	153	157	Right-handed 310
Helix 9	AA9	A	169	178	Right-handed alpha
Helix 10	AB1	A	191	200	Right-handed alpha
Helix 11	AB2	A	200	216	Right-handed alpha
Helix 12	AB3	A	230	242	Right-handed alpha
Helix 13	AB4	A	253	263	Right-handed alpha
Helix 14	AB5	A	271	275	Right-handed 310
Helix 15	AB6	A	279	283	Right-handed 310
Helix 16	AB7	A	284	289	Right-handed alpha
Helix 17	AB8	A	305	310	Right-handed alpha
Helix 18	AB9	A	329	337	Right-handed alpha
Helix 19	AC1	A	373	377	Right-handed 310
Helix 20	AC2	A	387	403	Right-handed alpha
Helix 21	AC3	A	405	409	Right-handed 310
Helix 22	AC4	A	410	417	Right-handed alpha
Helix 23	AC5	A	424	440	Right-handed alpha
Helix 24	AC6	A	447	455	Right-handed alpha
Helix 25	AC7	B	17	19	Right-handed 310
Helix 26	AC8	B	20	29	Right-handed alpha
Helix 27	AC9	B	30	34	Right-handed 310
Helix 28	AD1	B	35	46	Right-handed alpha
Helix 29	AD2	B	63	76	Right-handed alpha
Helix 30	AD3	B	91	100	Right-handed alpha
Helix 31	AD4	B	112	124	Right-handed alpha
Helix 32	AD5	B	141	150	Right-handed alpha
Helix 33	AD6	B	151	155	Right-handed 310
Helix 34	AD7	B	165	179	Right-handed alpha
Helix 35	AD8	B	191	196	Right-handed alpha
Helix 36	AD9	B	197	216	Right-handed alpha
Helix 37	AE1	B	230	243	Right-handed alpha
Helix 38	AE2	B	253	264	Right-handed alpha
Helix 39	AE3	B	271	275	Right-handed 310
Helix 40	AE4	B	279	283	Right-handed 310
Helix 41	AE5	B	284	289	Right-handed alpha
Helix 42	AE6	B	329	336	Right-handed alpha
Helix 43	AE7	B	387	403	Right-handed alpha
Helix 44	AE8	B	410	418	Right-handed alpha
Helix 45	AE9	B	424	439	Right-handed alpha
Helix 46	AF1	B	447	455	Right-handed alpha
Helix 47	AF2	C	20	33	Right-handed alpha
Helix 48	AF3	C	35	45	Right-handed alpha
Helix 49	AF4	C	63	76	Right-handed alpha
Helix 50	AF5	C	91	102	Right-handed alpha
Helix 51	AF6	C	112	125	Right-handed alpha
Helix 52	AF7	C	141	150	Right-handed alpha
Helix 53	AF8	C	165	178	Right-handed alpha
Helix 54	AF9	C	191	215	Right-handed alpha
Helix 55	AG1	C	230	242	Right-handed alpha
Helix 56	AG2	C	253	264	Right-handed alpha
Helix 57	AG3	C	271	275	Right-handed 310
Helix 58	AG4	C	279	283	Right-handed 310
Helix 59	AG5	C	284	289	Right-handed alpha
Helix 60	AG6	C	329	336	Right-handed alpha
Helix 61	AG7	C	385	405	Right-handed alpha
Helix 62	AG8	C	413	418	Right-handed alpha
Helix 63	AG9	C	424	437	Right-handed alpha
Helix 64	AH1	C	438	440	Right-handed 310
Helix 65	AH2	C	447	455	Right-handed alpha
Helix 66	AH3	D	19	34	Right-handed alpha
Helix 67	AH4	D	35	40	Right-handed alpha
Helix 68	AH5	D	40	45	Right-handed alpha
Helix 69	AH6	D	63	76	Right-handed alpha
Helix 70	AH7	D	91	100	Right-handed alpha
Helix 71	AH8	D	112	124	Right-handed alpha
Helix 72	AH9	D	141	150	Right-handed alpha
Helix 73	AI1	D	165	178	Right-handed alpha
Helix 74	AI2	D	191	196	Right-handed alpha
Helix 75	AI3	D	200	215	Right-handed alpha
Helix 76	AI4	D	230	242	Right-handed alpha
Helix 77	AI5	D	253	263	Right-handed alpha
Helix 78	AI6	D	271	275	Right-handed 310
Helix 79	AI7	D	279	283	Right-handed 310
Helix 80	AI8	D	284	289	Right-handed alpha
Helix 81	AI9	D	305	310	Right-handed alpha
Helix 82	AJ1	D	329	337	Right-handed alpha
Helix 83	AJ2	D	370	372	Right-handed 310
Helix 84	AJ3	D	383	403	Right-handed alpha
Helix 85	AJ4	D	410	418	Right-handed alpha
Helix 86	AJ5	D	424	439	Right-handed alpha
Helix 87	AJ6	D	447	455	Right-handed alpha

There are 11 sheets in PDB entry 9HKY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	135	136	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	267	first strand
Strand 2	A	246	250	parallel
Strand 3	A	223	227	parallel
Strand 4	A	293	296	parallel
Strand 5	A	317	320	parallel
Strand 6	A	364	367	parallel
Strand 7	A	346	350	anti-parallel
Strand 8	A	338	343	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	83	first strand
Strand 2	B	56	59	parallel
Strand 3	B	135	138	parallel
Strand 4	B	160	163	parallel
Strand 5	B	185	187	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	126	first strand
Strand 2	B	129	130	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	267	first strand
Strand 2	B	246	250	parallel
Strand 3	B	223	227	parallel
Strand 4	B	293	296	parallel
Strand 5	B	317	320	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	339	343	first strand
Strand 2	B	346	350	anti-parallel
Strand 3	B	364	368	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	82	first strand
Strand 2	C	55	58	parallel
Strand 3	C	135	138	parallel
Strand 4	C	160	163	parallel
Strand 5	C	185	187	parallel
Strand 6	C	420	422	parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	250	first strand
Strand 2	C	223	227	parallel
Strand 3	C	293	296	parallel
Strand 4	C	317	320	parallel
Strand 5	C	364	367	parallel
Strand 6	C	346	350	anti-parallel
Strand 7	C	338	343	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	135	138	parallel
Strand 3	D	160	163	parallel
Strand 4	D	186	187	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	129	130	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	267	first strand
Strand 2	D	246	250	parallel
Strand 3	D	223	227	parallel
Strand 4	D	293	296	parallel
Strand 5	D	317	320	parallel
Strand 6	D	364	368	parallel
Strand 7	D	346	350	anti-parallel
Strand 8	D	338	343	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HKY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HKY