Analysis of interatomic Contacts of Structural Units in PDB entry:
9HL2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HL2 entry

There are 2 chains in PDB entry 9HL2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 16PRO 375
B
 THR 17THR 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 9HL2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 31Right-handed alpha
Helix 2
AA2
A
40 51Right-handed alpha
Helix 3
AA3
A
56 67Right-handed alpha
Helix 4
AA4
A
73 86Right-handed alpha
Helix 5
AA5
A
111 119Right-handed alpha
Helix 6
AA6
A
131 145Right-handed alpha
Helix 7
AA7
A
151 155Right-handed 310
Helix 8
AA8
A
238 244Right-handed alpha
Helix 9
AA9
A
247 257Right-handed alpha
Helix 10
AB1
A
278 286Right-handed alpha
Helix 11
AB2
A
287 291Right-handed 310
Helix 12
AB3
B
94 98Right-handed 310
Back to top of page

There are 5 sheets in PDB entry 9HL2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
360 366anti-parallel
Strand 3
A
348 354anti-parallel
Strand 4
A
229 236anti-parallel
Strand 5
A
216 223anti-parallel
Strand 6
A
194 211anti-parallel
Strand 7
A
182 186anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
360 366anti-parallel
Strand 3
A
348 354anti-parallel
Strand 4
A
229 236anti-parallel
Strand 5
A
216 223anti-parallel
Strand 6
A
194 211anti-parallel
Strand 7
A
259 268anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 126first strand
Strand 2
A
95 105parallel
Strand 3
A
161 170anti-parallel
Strand 4
A
323 332anti-parallel
Strand 5
A
309 318anti-parallel
Strand 6
A
271 277anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 25first strand
Strand 2
B
117 129parallel
Strand 3
B
99 108anti-parallel
Strand 4
B
42 50anti-parallel
Strand 5
B
54 60anti-parallel
Strand 6
B
63 66anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 35first strand
Strand 2
B
85 90anti-parallel
Strand 3
B
75 77anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il