Analysis of interatomic Contacts of Structural Units in PDB entry:
9HLS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9HLS entry

There are 7 chains in PDB entry 9HLS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	CYS 291
B	VAL 7	ASN 268
C	GLU 3	SER 119
D	VAL 4	VAL 120
J	ASP 3	LEU 123
F	VAL 5	CYS 291
G	VAL 7	ARG 64

There are 77 helices in PDB entry 9HLS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	69	74	Right-handed 310
Helix 2	AA2	A	77	80	Right-handed 310
Helix 3	AA3	A	108	119	Right-handed alpha
Helix 4	AA4	A	139	148	Right-handed alpha
Helix 5	AA5	A	156	160	Right-handed 310
Helix 6	AA6	A	168	177	Right-handed alpha
Helix 7	AA7	A	182	191	Right-handed alpha
Helix 8	AA8	A	193	207	Right-handed alpha
Helix 9	AA9	A	211	221	Right-handed alpha
Helix 10	AB1	A	224	239	Right-handed alpha
Helix 11	AB2	A	242	247	Right-handed 310
Helix 12	AB3	A	260	266	Right-handed 310
Helix 13	AB4	A	267	271	Right-handed 310
Helix 14	AB5	A	276	280	Right-handed 310
Helix 15	AB6	A	281	291	Right-handed alpha
Helix 16	AB7	B	21	25	Right-handed 310
Helix 17	AB8	B	26	29	Right-handed 310
Helix 18	AB9	B	30	35	Right-handed alpha
Helix 19	AC1	B	49	51	Right-handed 310
Helix 20	AC2	B	52	60	Right-handed alpha
Helix 21	AC3	B	84	90	Right-handed alpha
Helix 22	AC4	B	127	135	Right-handed alpha
Helix 23	AC5	B	143	154	Right-handed alpha
Helix 24	AC6	B	159	180	Right-handed alpha
Helix 25	AC7	B	183	197	Right-handed alpha
Helix 26	AC8	B	198	211	Right-handed alpha
Helix 27	AC9	B	213	218	Right-handed alpha
Helix 28	AD1	B	227	235	Right-handed alpha
Helix 29	AD2	B	240	244	Right-handed 310
Helix 30	AD3	B	245	251	Right-handed alpha
Helix 31	AD4	B	252	256	Right-handed 310
Helix 32	AD5	B	257	264	Right-handed alpha
Helix 33	AD6	B	265	267	Right-handed 310
Helix 34	AD7	C	30	32	Right-handed 310
Helix 35	AD8	C	88	92	Right-handed 310
Helix 36	AD9	D	75	77	Right-handed 310
Helix 37	AE1	D	88	92	Right-handed 310
Helix 38	AE2	J	88	92	Right-handed 310
Helix 39	AE3	F	69	74	Right-handed 310
Helix 40	AE4	F	77	80	Right-handed 310
Helix 41	AE5	F	108	119	Right-handed alpha
Helix 42	AE6	F	139	148	Right-handed alpha
Helix 43	AE7	F	156	160	Right-handed 310
Helix 44	AE8	F	168	177	Right-handed alpha
Helix 45	AE9	F	182	191	Right-handed alpha
Helix 46	AF1	F	193	208	Right-handed alpha
Helix 47	AF2	F	211	221	Right-handed alpha
Helix 48	AF3	F	224	239	Right-handed alpha
Helix 49	AF4	F	242	247	Right-handed 310
Helix 50	AF5	F	260	266	Right-handed 310
Helix 51	AF6	F	267	271	Right-handed 310
Helix 52	AF7	F	276	280	Right-handed 310
Helix 53	AF8	F	281	291	Right-handed alpha
Helix 54	AF9	G	21	25	Right-handed 310
Helix 55	AG1	G	26	29	Right-handed 310
Helix 56	AG2	G	30	35	Right-handed alpha
Helix 57	AG3	G	49	51	Right-handed 310
Helix 58	AG4	G	52	60	Right-handed alpha
Helix 59	AG5	G	84	90	Right-handed alpha
Helix 60	AG6	G	120	124	Right-handed 310
Helix 61	AG7	G	127	135	Right-handed alpha
Helix 62	AG8	G	143	154	Right-handed alpha
Helix 63	AG9	G	159	180	Right-handed alpha
Helix 64	AH1	G	183	197	Right-handed alpha
Helix 65	AH2	G	198	211	Right-handed alpha
Helix 66	AH3	G	213	218	Right-handed alpha
Helix 67	AH4	G	227	235	Right-handed alpha
Helix 68	AH5	G	240	244	Right-handed 310
Helix 69	AH6	G	245	251	Right-handed alpha
Helix 70	AH7	G	252	256	Right-handed 310
Helix 71	AH8	G	257	264	Right-handed alpha
Helix 72	AH9	G	265	267	Right-handed 310
Helix 73	AI1	H	30	32	Right-handed 310
Helix 74	AI2	H	88	92	Right-handed 310
Helix 75	AI3	I	75	77	Right-handed 310
Helix 76	AI4	I	88	92	Right-handed 310
Helix 77	AI5	E	88	92	Right-handed 310

There are 28 sheets in PDB entry 9HLS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	13	first strand
Strand 2	A	21	28	anti-parallel
Strand 3	A	34	40	anti-parallel
Strand 4	A	100	101	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	129	132	anti-parallel
Strand 3	A	82	85	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	62	first strand
Strand 2	A	122	127	anti-parallel
Strand 3	A	89	93	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	47	first strand
Strand 2	B	73	78	anti-parallel
Strand 3	B	63	67	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	96	100	anti-parallel
Strand 3	B	113	116	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	20	27	anti-parallel
Strand 3	C	79	84	anti-parallel
Strand 4	C	69	74	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	117	118	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	48	53	anti-parallel
Strand 3	C	34	41	anti-parallel
Strand 4	C	94	101	anti-parallel
Strand 5	C	108	115	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	9	first strand
Strand 2	D	19	27	anti-parallel
Strand 3	D	79	85	anti-parallel
Strand 4	D	69	74	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	61	first strand
Strand 2	D	48	54	anti-parallel
Strand 3	D	32	41	anti-parallel
Strand 4	D	93	104	anti-parallel
Strand 5	D	107	112	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	61	first strand
Strand 2	D	48	54	anti-parallel
Strand 3	D	32	41	anti-parallel
Strand 4	D	93	104	anti-parallel
Strand 5	D	116	118	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	4	9	first strand
Strand 2	J	19	28	anti-parallel
Strand 3	J	79	85	anti-parallel
Strand 4	J	69	74	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	13	14	first strand
Strand 2	J	116	120	parallel
Strand 3	J	93	103	anti-parallel
Strand 4	J	35	41	anti-parallel
Strand 5	J	48	54	anti-parallel
Strand 6	J	60	61	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	13	14	first strand
Strand 2	J	116	120	parallel
Strand 3	J	93	103	anti-parallel
Strand 4	J	107	112	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	7	13	first strand
Strand 2	F	21	28	anti-parallel
Strand 3	F	36	40	anti-parallel
Strand 4	F	100	101	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	54	55	first strand
Strand 2	F	129	132	anti-parallel
Strand 3	F	82	85	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	60	62	first strand
Strand 2	F	122	127	anti-parallel
Strand 3	F	89	93	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	47	first strand
Strand 2	G	73	78	anti-parallel
Strand 3	G	63	67	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	103	105	first strand
Strand 2	G	96	100	anti-parallel
Strand 3	G	113	116	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	6	first strand
Strand 2	H	20	27	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	69	74	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	13	14	first strand
Strand 2	H	117	118	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	61	first strand
Strand 2	H	48	53	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	94	101	anti-parallel
Strand 5	H	108	115	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	9	first strand
Strand 2	I	19	27	anti-parallel
Strand 3	I	79	85	anti-parallel
Strand 4	I	69	74	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	61	first strand
Strand 2	I	48	54	anti-parallel
Strand 3	I	32	41	anti-parallel
Strand 4	I	93	104	anti-parallel
Strand 5	I	107	111	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	61	first strand
Strand 2	I	48	54	anti-parallel
Strand 3	I	32	41	anti-parallel
Strand 4	I	93	104	anti-parallel
Strand 5	I	116	118	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	9	first strand
Strand 2	E	19	28	anti-parallel
Strand 3	E	79	85	anti-parallel
Strand 4	E	69	74	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	E	116	120	parallel
Strand 3	E	93	103	anti-parallel
Strand 4	E	35	41	anti-parallel
Strand 5	E	48	54	anti-parallel
Strand 6	E	60	61	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	E	116	120	parallel
Strand 3	E	93	103	anti-parallel
Strand 4	E	107	112	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9HLS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9HLS