Analysis of interatomic Contacts of Structural Units in PDB entry:
9HM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HM2 entry

There are 4 chains in PDB entry 9HM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 184SER 266
B
 GLY 184SER 266
C
 SER 1VAL 9
D
 SER 2VAL 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 9HM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
215 220Right-handed alpha
Helix 2
AA2
A
241 252Right-handed alpha
Helix 3
AA3
A
262 266Right-handed 310
Helix 4
AA4
B
215 221Right-handed alpha
Helix 5
AA5
B
241 251Right-handed alpha
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There are 3 sheets in PDB entry 9HM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 190first strand
Strand 2
B
255 261anti-parallel
Strand 3
B
228 232anti-parallel
Strand 4
B
235 236anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 236first strand
Strand 2
A
228 232anti-parallel
Strand 3
A
200 211anti-parallel
Strand 4
B
200 211anti-parallel
Strand 5
C
7 8anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 190first strand
Strand 2
A
255 261anti-parallel
Strand 3
A
228 232anti-parallel
Strand 4
A
200 211anti-parallel
Strand 5
D
7 8anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il