Analysis of interatomic Contacts of Structural Units in PDB entry:
9HM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9HM4 entry

There are 4 chains in PDB entry 9HM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 1158
B
 A 19 U 65
C
 A 7 A 40
D
 G 1 A 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9HM4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
228 240Right-handed alpha
Helix 2
AA2
A
245 249Right-handed 310
Helix 3
AA3
A
255 268Right-handed alpha
Helix 4
AA4
A
292 314Right-handed alpha
Helix 5
AA5
A
316 322Right-handed alpha
Helix 6
AA6
A
332 349Right-handed alpha
Helix 7
AA7
A
350 355Right-handed 310
Helix 8
AA8
A
357 370Right-handed alpha
Helix 9
AA9
A
372 384Right-handed alpha
Helix 10
AB1
A
384 418Right-handed alpha
Helix 11
AB2
A
419 421Right-handed 310
Helix 12
AB3
A
441 452Right-handed alpha
Helix 13
AB4
A
471 480Right-handed alpha
Helix 14
AB5
A
488 493Right-handed alpha
Helix 15
AB6
A
494 498Right-handed 310
Helix 16
AB7
A
509 514Right-handed 310
Helix 17
AB8
A
516 530Right-handed alpha
Helix 18
AB9
A
530 537Right-handed alpha
Helix 19
AC1
A
540 548Right-handed alpha
Helix 20
AC2
A
555 568Right-handed alpha
Helix 21
AC3
A
579 585Right-handed alpha
Helix 22
AC4
A
607 617Right-handed alpha
Helix 23
AC5
A
618 623Right-handed alpha
Helix 24
AC6
A
642 647Right-handed alpha
Helix 25
AC7
A
688 697Right-handed alpha
Helix 26
AC8
A
725 729Right-handed 310
Helix 27
AC9
A
732 742Right-handed alpha
Helix 28
AD1
A
742 747Right-handed alpha
Helix 29
AD2
A
774 779Right-handed alpha
Helix 30
AD3
A
779 788Right-handed alpha
Helix 31
AD4
A
790 801Right-handed alpha
Helix 32
AD5
A
828 846Right-handed alpha
Helix 33
AD6
A
866 877Right-handed alpha
Helix 34
AD7
A
879 885Right-handed alpha
Helix 35
AD8
A
889 900Right-handed alpha
Helix 36
AD9
A
901 905Right-handed 310
Helix 37
AE1
A
908 916Right-handed alpha
Helix 38
AE2
A
960 966Right-handed 310
Helix 39
AE3
A
968 971Right-handed 310
Helix 40
AE4
A
972 977Right-handed alpha
Helix 41
AE5
A
992 995Right-handed 310
Helix 42
AE6
A
996 1024Right-handed alpha
Helix 43
AE7
A
1036 1046Right-handed alpha
Helix 44
AE8
A
1050 1063Right-handed alpha
Helix 45
AE9
A
1073 1079Right-handed alpha
Helix 46
AF1
A
1102 1106Right-handed 310
Helix 47
AF2
A
1135 1137Right-handed 310
Helix 48
AF3
A
1138 1158Right-handed alpha
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There are 8 sheets in PDB entry 9HM4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 463first strand
Strand 2
A
423 430anti-parallel
Strand 3
A
209 215parallel
Strand 4
A
633 639anti-parallel
Strand 5
A
663 672anti-parallel
Strand 6
A
629 630anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 463first strand
Strand 2
A
423 430anti-parallel
Strand 3
A
433 440anti-parallel
Strand 4
A
590 594anti-parallel
Strand 5
A
6 18anti-parallel
Strand 6
A
663 672anti-parallel
Strand 7
A
629 630anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
275 277first strand
Strand 2
A
289 291parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 468first strand
Strand 2
A
569 570anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
810 811first strand
Strand 2
A
719 724anti-parallel
Strand 3
A
707 713anti-parallel
Strand 4
A
1027 1032parallel
Strand 5
A
1095 1098parallel
Strand 6
A
1090 1092anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
802 807first strand
Strand 2
A
748 753anti-parallel
Strand 3
A
821 823parallel
Strand 4
A
816 818anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
759 761first strand
Strand 2
A
767 769anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
857 861first strand
Strand 2
A
933 939anti-parallel
Strand 3
A
950 958anti-parallel
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